View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11629_high_1 (Length: 832)
Name: NF11629_high_1
Description: NF11629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11629_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 327; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 424 - 816
Target Start/End: Complemental strand, 10470126 - 10469733
Alignment:
| Q |
424 |
agcatctttagttttccatactatctagatgctagagaaccatatggtctggtctcccaaatgggaagaccgccatttcaaagattcactccacaccacc |
523 |
Q |
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| T |
10470126 |
agcatctctagttttccatactatctagatgctagagaaccatatggtcgggtctcccaaatgggaagaccgccatttcaaagattcactccacaccact |
10470027 |
T |
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| Q |
524 |
tataaaattgaccaattaaagaagatgatttaggatttctagatttcaacaataagatgaagaattgatattgannnnnnnnn-cttcctaaagttatca |
622 |
Q |
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| T |
10470026 |
tataaaattgaacaattaaagaagatgatttaggatttctagatttccacaataagatgaagaattgatattgattttttttttcttcctaaagttatca |
10469927 |
T |
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| Q |
623 |
tttgtttgaaggagtgaatagccaatcacctccttgaatttgtatcttcactcgaatacttcccttaaatctgcgaaatagcaaaaatcccccaaaattt |
722 |
Q |
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| T |
10469926 |
tttgtttgaaggagtgaatagccaatcacctccttgaatttgtatcttcactcgaatacttcccttaaatctgcaaaatagcaaaaatcccccaaaattt |
10469827 |
T |
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| Q |
723 |
gctaagcttctgccactcagtccctccgttagttttcgccgtttgagagtatgacgtggtcgttaactatcgacctaatagtgcgacatgtttt |
816 |
Q |
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| T |
10469826 |
gctaagcttctgccactcagtccctccgttagttttcgccgtttgagagtatgatgtggtcgttaactatcgacctaatagtgccacatgtttt |
10469733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 14 - 153
Target Start/End: Complemental strand, 10470263 - 10470124
Alignment:
| Q |
14 |
agaccaatccaatagtgaaagaacataaagttccagaaaagaaacatcatgatctctcaagtactcgagagttgaaatgctgctccttgctcaataggta |
113 |
Q |
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| T |
10470263 |
agaccaatccaacagtgaaagaacataaagttcctgaaaagaaacatcatgatctctcaagtactcgagagttgaaatgctgctccttgctcaataggta |
10470164 |
T |
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| Q |
114 |
acgtggtccgtaatacgcagcagaataaagaacgcatagc |
153 |
Q |
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| T |
10470163 |
acgtggtccgtaatacgcagcagaataaagaacgcatagc |
10470124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 274 - 409
Target Start/End: Original strand, 10616232 - 10616367
Alignment:
| Q |
274 |
ttactgtccccaaacagctcaacttgttctcaagccacttatttcttgcataaacaattcctcttgttatggttttaagaattttctaagatagaacttt |
373 |
Q |
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| T |
10616232 |
ttactatccccaaacagctcaaagggttttcaagccactgattcattgcataaatgaatcctcttgatttggtgctatggagtttccaagataggattta |
10616331 |
T |
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| Q |
374 |
tgcctcctccacaaccttctccaactcaaaaccttt |
409 |
Q |
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| T |
10616332 |
tgtctcctccacaatcttctcccaatcaaaaccttt |
10616367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 333 - 418
Target Start/End: Original strand, 30950131 - 30950217
Alignment:
| Q |
333 |
cctcttgttatggttttaagaattttctaagatagaacttttgc-ctcctccacaaccttctccaactcaaaacctttatgagaaaa |
418 |
Q |
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| T |
30950131 |
cctcttgatttggttttaagcatctcctaagatagaatttttggtctcctccgcaaccttatcccaatcataacctttatgagaaaa |
30950217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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