View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11629_high_11 (Length: 317)
Name: NF11629_high_11
Description: NF11629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11629_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 18 - 309
Target Start/End: Original strand, 14246203 - 14246494
Alignment:
| Q |
18 |
gattcaattgtcaatgctatttgtgggaatcatgaacccgtaatgggttgagttttcttactcaccttgaatacgacaattacgaggtttgccccattta |
117 |
Q |
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| T |
14246203 |
gattcaattgtcaatgctatttgtgggaatcatgaacccgtaatgggttgagttttcttactcaccttgaatacgacaattacgatgtttgccccattta |
14246302 |
T |
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| Q |
118 |
tgtttgtgcatcagtgtcgttcttgttgcatatttctcctagcaaagagcacgtaatgtcatgtttggttatgtgggttgattgtatttttcgtgtgcca |
217 |
Q |
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| T |
14246303 |
tgtttgtgcatcagtgtcgttcttgttgcatatttctcctagcaaagagcacgtaatgtcatgtttggttatgtgagttgattgtatttttcgtgtgcca |
14246402 |
T |
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| Q |
218 |
atgtccgctgagctgtaaattctccaaaactctaattaatagaagtagatcaaataactgccgacacaaacaagcgctatgatgtccatctc |
309 |
Q |
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| T |
14246403 |
atgtccgctgagctgtaaattctccaaaactctaattaatagaagtagatcaaatagttgccgacacaaacaagcgctatgttgtctatctc |
14246494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 18 - 309
Target Start/End: Complemental strand, 14380039 - 14379749
Alignment:
| Q |
18 |
gattcaattgtcaatgctatttgtgggaatcatgaacccgtaatgggttgagttttcttactcaccttgaatacgacaattacgaggtttgccccattta |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||| ||||||||| ||||||| |
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| T |
14380039 |
gattcaattgtcaatgctatttgtgggaatcatgaacctctaatgggttgagttttcttactcaccttgactacaacaattatgaggtttgcgccattta |
14379940 |
T |
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| Q |
118 |
tgtttgtgcatcagtgtcgttcttgttgcatatttctcctagcaaagagcacgtaatgtcatgtttggttatgtgggttgattgtatttttcgtgtgcca |
217 |
Q |
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| T |
14379939 |
tgtttgtgcattagtgtcgtacttgttgcatattgcccctggcaaagagcaagtaatgtcatgtttggttatataggttgattttatttctcgcat-ccg |
14379841 |
T |
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| Q |
218 |
atgtccgctgagctgtaaattctccaaaactctaattaatagaagtagatcaaataactgccgacacaaacaagcgctatgatgtccatctc |
309 |
Q |
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| || | |||| |||||||| ||||||||||||||| ||||||| | ||||||| ||| | |||||||||| ||||||||| ||||| |
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| T |
14379840 |
aagtttgttgagttgtaaattgaccaaaactctaattagtagaagttggtcaaatagttgctgcatcaaacaagcgttatgatgtctatctc |
14379749 |
T |
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