View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11629_high_16 (Length: 252)
Name: NF11629_high_16
Description: NF11629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11629_high_16 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 19 - 252
Target Start/End: Original strand, 7089401 - 7089634
Alignment:
| Q |
19 |
agataaggtaacagtttaatgattgaattgtaactttactctggaaaacagaaagatgaaaaagaatactacnnnnnnnngcctaaaagaaggtaattca |
118 |
Q |
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| T |
7089401 |
agataaggtaacagtttaatgattgaattgtaagtttactctggaaaacagaaagatgaaaaagaatactacaaaaaaaagcctaaaagaaggtaattca |
7089500 |
T |
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| Q |
119 |
atttttaacaactacatacttcatttgattcaaagagaagtcttagtattattttacaaaaattccaacaaaattttgttaccaaatagagagtaatttc |
218 |
Q |
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| T |
7089501 |
agttttaacaactacatacttcatttgattcaaagagaagtcttagtattattttaaaaaaattccaacaaaattttgttaccaaatagagagtaatttc |
7089600 |
T |
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| Q |
219 |
atgtgagcactacaatcttaccagggcttagacc |
252 |
Q |
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| T |
7089601 |
atgtgagcactacaatcttaccagggcttagacc |
7089634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 134 - 252
Target Start/End: Original strand, 7669346 - 7669464
Alignment:
| Q |
134 |
atacttcatttgattcaaagagaagtcttagtattattttacaaaaattccaacaaaattttgttaccaaatagagagtaatttcatgtgagcactacaa |
233 |
Q |
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| T |
7669346 |
atacttaatttgattcaaagagaaaccttggtgtgattttagaaaaatccaaacaaaattttgttatcaaatagagaataatttcatgtgagcacaacaa |
7669445 |
T |
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| Q |
234 |
tcttaccagggcttagacc |
252 |
Q |
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| T |
7669446 |
tcttaccagggcttagacc |
7669464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 39 - 135
Target Start/End: Original strand, 7668793 - 7668888
Alignment:
| Q |
39 |
gattgaattgtaactttactctggaaaacagaaagatgaaaaagaatactacnnnnnnnngcctaaaagaaggtaattcaatttttaacaactacat |
135 |
Q |
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| T |
7668793 |
gattgaattgaaagttcactctggaaaacagaaggatgaaaaagaatactacaaaaaaaa-cctaaaagagggtatttcaagttttaacaactacat |
7668888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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