View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11629_high_4 (Length: 579)
Name: NF11629_high_4
Description: NF11629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11629_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 331; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 213 - 558
Target Start/End: Original strand, 1915442 - 1915790
Alignment:
| Q |
213 |
ggaatagatggctgagtaggttttggcaatgctgcagggattgttggcaaaggtggca---atgttggttttggaagtgtaggtgtggttggatttgttg |
309 |
Q |
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| T |
1915442 |
ggaatagatggctgagtaggttttggcaatgctgcagggattgttggcaaaggtggcagcaatgttggttttggaagtgtaggtgtagttggatttgttg |
1915541 |
T |
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| Q |
310 |
tctgaagaagattgcgagctgctagggtaatgtccatgtttgagaaggaaatagcaatgaaaattgccaaaatgaaggaattataggaagccatggcaaa |
409 |
Q |
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| T |
1915542 |
tctgaagaagattgcgagctgctagggtaatgtccatgtttgagaaggaaatagcaatgaaaattgccaaaatgaaggaattataggaagccatggcaaa |
1915641 |
T |
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| Q |
410 |
attagggctttgtgatgaatgtttagtagattttgctatgagttagttaactagcttgtgttgtgtgcatattcatgggactagtggaaggccttttatg |
509 |
Q |
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| T |
1915642 |
attagggctttgtgatgaatgtttagtagattttgctatgagttagttaactagcttgtgttgtgtgcatattcatgggactagtggaaggccttttatg |
1915741 |
T |
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| Q |
510 |
gacaaaaccttttgagtgtttttccatgttggtttagctaattaacctt |
558 |
Q |
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| T |
1915742 |
gacaaaaccttttgagtgtttttccatgttggtttagctaattaacctt |
1915790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 1915281 - 1915419
Alignment:
| Q |
1 |
tatgacacacacccaacaactaatgaataatgtataatatgataaatatatctataaaacacacttgacatgaacttcaagggttggtttttgaaggtgg |
100 |
Q |
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| T |
1915281 |
tatgacacacacccaacaactaatgaacaatgtataatatgataaatatatctataaaacacacttgacatgaacttcaagggttggtttttgaaggtgg |
1915380 |
T |
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| Q |
101 |
tggagaaaagaaagggaatattgttggcaaagtgattgg |
139 |
Q |
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| T |
1915381 |
tggagaaaagaaagggaatattgtcggcaaagtgtttgg |
1915419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 154 - 193
Target Start/End: Original strand, 1915413 - 1915452
Alignment:
| Q |
154 |
tgtttggaagtggtggaagattgaactgtggaatagatgg |
193 |
Q |
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| T |
1915413 |
tgtttggaagtggtggaagagtgaactggggaatagatgg |
1915452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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