View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11629_low_10 (Length: 320)
Name: NF11629_low_10
Description: NF11629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11629_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 35 - 311
Target Start/End: Complemental strand, 35445148 - 35444873
Alignment:
| Q |
35 |
attagataaaagatttgtagaattggtttcgataattagagcaagttaagtttttgcagtttaatactagctttggtaactaaacatctgtggtctgagt |
134 |
Q |
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| T |
35445148 |
attagataaaagatt-gtagaattggtttcgataattagagcaagttaagtttttgcagtttaatactagctttgataactaaacatctgtggtctgagt |
35445050 |
T |
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| Q |
135 |
atatttcaacttttagcctgatctctcacaatgnnnnnnnnnnnnnnnnnnttcaatatacatttggtcattttcttcgatgtgctggtagtttggaagt |
234 |
Q |
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| T |
35445049 |
atatttcaacttttagcctgatctctcacaatgaaaagaaaagaaaaaaaattcaatatacatttggtcattttcttcgatgtgctggtagtttggaagt |
35444950 |
T |
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| Q |
235 |
tttcatttattcttcattgttccatgagtatatatgtaggtagcactcattgtcattgacattaaattccttcatct |
311 |
Q |
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| T |
35444949 |
tttcatttattcttcattgttccatgagtatatatgtaggtagcactcattgtcattgacattaaattccttcatct |
35444873 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 227 - 311
Target Start/End: Original strand, 49539420 - 49539504
Alignment:
| Q |
227 |
ttggaagttttcatttattcttcattgttccatgagtatatatgtaggtagcactcattgtcattgacattaaattccttcatct |
311 |
Q |
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||||||| || |||||||||||||||| |||||||||||||||| | | |||| ||||||||||||||||| || || ||||||| |
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| T |
49539420 |
ttggaagattccatttattcttcattgctccatgagtatatatgcatgcagcaatcattgtcattgacattcaaatctttcatct |
49539504 |
T |
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