View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11629_low_12 (Length: 312)
Name: NF11629_low_12
Description: NF11629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11629_low_12 |
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| [»] chr7 (4 HSPs) |
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| [»] scaffold0117 (1 HSPs) |
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| [»] scaffold0009 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 255; Significance: 1e-142; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 18 - 312
Target Start/End: Original strand, 10281122 - 10281415
Alignment:
| Q |
18 |
gtatttctataatcaagctagtagtgagtgtctattattgtttgaagaatcaaagcaaaacaccnnnnnnnnncgtaaaacagaaataaactaagagttt |
117 |
Q |
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| T |
10281122 |
gtatttctataatcaagctagtagtgagtgtctattattgtttgaagaatcaaagcaaaacaccaaaaaaaa-cgtaaaacagaaataaactaagagttt |
10281220 |
T |
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| Q |
118 |
tactctttggagaatcaaagcaaaattaatcaagaaattaaatttctattggagaggaacaattttatgaacacaaaattaatcaaagcacaattgtgaa |
217 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10281221 |
tactctttggagaatcaaagcaaaattaatcaagatattaaatttctattggagaggaacaattttatgaacacaaaattaatcaaagcacaattgtgaa |
10281320 |
T |
|
| Q |
218 |
gaataaataagataaggccttaactaattaattaatcaaggaaatcacaatggaaatataacattgaatattgtttaatatgtgataaatggttc |
312 |
Q |
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| T |
10281321 |
gaataaataagataaggccttaactaattaattaatcaaggaaatcacaatgaaaatataacattgaatattgtttaatatgtgataaatggttc |
10281415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 92 - 210
Target Start/End: Original strand, 10266728 - 10266839
Alignment:
| Q |
92 |
gtaaaacagaaataaactaagagttttactctttggagaatcaaagcaaaattaatcaagaaattaaatttctattggagaggaacaattttatgaacac |
191 |
Q |
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| T |
10266728 |
gtaaaacataaataaacgaagagttttacactttcgagaatcaaagaaaaattaatcaag-----aaatttctaatggagaggaacaa--ttgtgaacac |
10266820 |
T |
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| Q |
192 |
aaaattaatcaaagcacaa |
210 |
Q |
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||||| ||||||||||||| |
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| T |
10266821 |
aaaatgaatcaaagcacaa |
10266839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 136
Target Start/End: Original strand, 48014333 - 48014366
Alignment:
| Q |
103 |
ataaactaagagttttactctttggagaatcaaa |
136 |
Q |
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| T |
48014333 |
ataaattaagagttttactctttggagaatcaaa |
48014366 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 296
Target Start/End: Original strand, 48014451 - 48014499
Alignment:
| Q |
248 |
attaatcaaggaaatcacaatggaaatataacattgaatattgtttaat |
296 |
Q |
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| T |
48014451 |
attaatcaagaaaatcacaatcgaaatattttattgaatattgtttaat |
48014499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0117 (Bit Score: 79; Significance: 6e-37; HSPs: 1)
Name: scaffold0117
Description:
Target: scaffold0117; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 185 - 312
Target Start/End: Original strand, 13537 - 13659
Alignment:
| Q |
185 |
tgaacacaaaattaatcaaagcacaattgtgaagaataaataagataaggccttaactaattaattaatcaaggaaatcacaatggaaatataacattga |
284 |
Q |
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||||||||||||||||||||||| | ||||||| |||||||||||||||| |||||||||| ||||||||||||| |||| |||||||||||||||| |
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| T |
13537 |
tgaacacaaaattaatcaaagcata-ttgtgaacaataaataagataaggtcttaactaat----taatcaaggaaattacaacggaaatataacattga |
13631 |
T |
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| Q |
285 |
atattgtttaatatgtgataaatggttc |
312 |
Q |
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|||||| ||||||||||||||||||||| |
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| T |
13632 |
atattgattaatatgtgataaatggttc |
13659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 245 - 312
Target Start/End: Complemental strand, 101806 - 101739
Alignment:
| Q |
245 |
ttaattaatcaaggaaatcacaatggaaatataacattgaatattgtttaatatgtgataaatggttc |
312 |
Q |
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| T |
101806 |
ttaattaatcaaggaaatcacaatggaaatataacattgaatattgtttaatatgtgataaattgttc |
101739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 96 - 156
Target Start/End: Complemental strand, 22857169 - 22857109
Alignment:
| Q |
96 |
aacagaaataaactaagagttttactctttggagaatcaaagcaaaattaatcaagaaatt |
156 |
Q |
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|||| ||||||||||| |||||||||||||||||||| | || ||||| |||||||||||| |
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| T |
22857169 |
aacataaataaactaatagttttactctttggagaattagagaaaaatcaatcaagaaatt |
22857109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 156
Target Start/End: Complemental strand, 24889036 - 24888984
Alignment:
| Q |
104 |
taaactaagagttttactctttggagaatcaaagcaaaattaatcaagaaatt |
156 |
Q |
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|||||||| |||| ||||||||||||||| |||| |||| |||||||||||| |
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| T |
24889036 |
taaactaatagttctactctttggagaattaaagataaatcaatcaagaaatt |
24888984 |
T |
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