View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11629_low_15 (Length: 259)

Name: NF11629_low_15
Description: NF11629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11629_low_15
NF11629_low_15
[»] chr7 (14 HSPs)
chr7 (18-167)||(3617734-3617883)
chr7 (18-164)||(29071655-29071801)
chr7 (19-167)||(29058428-29058576)
chr7 (25-167)||(29069200-29069342)
chr7 (38-167)||(29078408-29078537)
chr7 (19-125)||(29072884-29072990)
chr7 (25-144)||(29111146-29111265)
chr7 (27-114)||(29098134-29098221)
chr7 (27-113)||(28956624-28956710)
chr7 (19-167)||(3618768-3618916)
chr7 (27-122)||(29113378-29113473)
chr7 (19-113)||(29101859-29101953)
chr7 (19-125)||(29115992-29116098)
chr7 (83-167)||(29064475-29064559)
[»] chr4 (3 HSPs)
chr4 (18-164)||(11851371-11851517)
chr4 (25-155)||(11854094-11854224)
chr4 (19-167)||(11850178-11850326)


Alignment Details
Target: chr7 (Bit Score: 138; Significance: 3e-72; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 18 - 167
Target Start/End: Original strand, 3617734 - 3617883
Alignment:
Q  18 cttagtatgagtagatactgatggtgaacattcataagttgtgtacatttttccttgtacacaacaatcagaatcattctctttattacattgtccagat 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||    
T  3617734 cttagtatgagtagatactgatggtgaacattcataagttgtgtacatctttccttgtacacaacaatcagagtcattctctttgttacattgtccagat 3617833  T
Q  118 ggagctttctttcccctgattctaccgttcggacgacacttttgagcttc 167  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3617834 ggagctttctttcccctgattctaccgttcggacgacacttttgagcttc 3617883  T

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Target: chr7; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 18 - 164
Target Start/End: Original strand, 29071655 - 29071801
Alignment:
Q  18 cttagtatgagtagatactgatggtgaacattcataagttgtgtacatttttccttgtacacaacaatcagaatcattctctttattacattgtccagat 117  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| || |||||||| |||    
T  29071655 cttagtatgagtagacactgatggtgaacattcataagttgtgtacatctttccttgtacacaacaatcagagtcattctctttgttgcattgtcccgat 29071754  T
Q  118 ggagctttctttcccctgattctaccgttcggacgacacttttgagc 164  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||    
T  29071755 ggagctttctttcccctgattctaccgtttggacgacacttttgagc 29071801  T

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Target: chr7; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 19 - 167
Target Start/End: Original strand, 29058428 - 29058576
Alignment:
Q  19 ttagtatgagtagatactgatggtgaacattcataagttgtgtacatttttccttgtacacaacaatcagaatcattctctttattacattgtccagatg 118  Q
    |||||||||| ||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| || |||||||||||||    
T  29058428 ttagtatgagcagacaccgatggtgaacattcataagttgtgtacatctttccttgtacacaacaatcagagtcattctctttgttgcattgtccagatg 29058527  T
Q  119 gagctttctttcccctgattctaccgttcggacgacacttttgagcttc 167  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  29058528 gagctttctttcccctgattctaccgtttggacgacacttttgagcttc 29058576  T

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Target: chr7; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 25 - 167
Target Start/End: Original strand, 29069200 - 29069342
Alignment:
Q  25 tgagtagatactgatggtgaacattcataagttgtgtacatttttccttgtacacaacaatcagaatcattctctttattacattgtccagatggagctt 124  Q
    |||||||| |||||||| |||||| |||| |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |  |||||||    
T  29069200 tgagtagacactgatggagaacatacatatgttgtgtacatttttccttgtacacaacaatcagaatcgttctcttgattacattgtcctggaggagctt 29069299  T
Q  125 tctttcccctgattctaccgttcggacgacacttttgagcttc 167  Q
    ||||||| || ||||||||| | |||||||| || ||||||||    
T  29069300 tctttcctctaattctaccgcttggacgacagttctgagcttc 29069342  T

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Target: chr7; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 38 - 167
Target Start/End: Original strand, 29078408 - 29078537
Alignment:
Q  38 atggtgaacattcataagttgtgtacatttttccttgtacacaacaatcagaatcattctctttattacattgtccagatggagctttctttcccctgat 137  Q
    ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||| |  |||||||||||||| || ||    
T  29078408 atggtgaacatacataagttgtgtacatttttccttctacacaacaatcagaatcattctcttgattgcattgtcctggaggagctttctttcctctaat 29078507  T
Q  138 tctaccgttcggacgacacttttgagcttc 167  Q
    ||||||| | |||||||| || ||||||||    
T  29078508 tctaccgcttggacgacaattctgagcttc 29078537  T

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Target: chr7; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 19 - 125
Target Start/End: Complemental strand, 29072990 - 29072884
Alignment:
Q  19 ttagtatgagtagatactgatggtgaacattcataagttgtgtacatttttccttgtacacaacaatcagaatcattctctttattacattgtccagatg 118  Q
    ||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||| | |||||||||||| || |    
T  29072990 ttagtgtgagtagatactgatggtgaacatttataagttgtgtacatttttccctgtacacaacaatcagagtcattctcctgattacattgtccggaag 29072891  T
Q  119 gagcttt 125  Q
    |||||||    
T  29072890 gagcttt 29072884  T

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Target: chr7; HSP #7
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 25 - 144
Target Start/End: Original strand, 29111146 - 29111265
Alignment:
Q  25 tgagtagatactgatggtgaacattcataagttgtgtacatttttccttgtacacaacaatcagaatcattctctttattacattgtccagatggagctt 124  Q
    ||||| || ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||| ||| |  |||||||    
T  29111146 tgagtggacactgatggtgaacatacataagttgtgtacatttttccttgtacgcaacaatcagaatcattctcttgattgcattttcctggaggagctt 29111245  T
Q  125 tctttcccctgattctaccg 144  Q
    ||||||| || |||||||||    
T  29111246 tctttcctctaattctaccg 29111265  T

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Target: chr7; HSP #8
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 27 - 114
Target Start/End: Complemental strand, 29098221 - 29098134
Alignment:
Q  27 agtagatactgatggtgaacattcataagttgtgtacatttttccttgtacacaacaatcagaatcattctctttattacattgtcca 114  Q
    |||||| |||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||| |||||||||    
T  29098221 agtagacactgatggcgaacattcataagttgtatacatttgtccttgtacacaacaatcagaatcattctcttgattgcattgtcca 29098134  T

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Target: chr7; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 27 - 113
Target Start/End: Complemental strand, 28956710 - 28956624
Alignment:
Q  27 agtagatactgatggtgaacattcataagttgtgtacatttttccttgtacacaacaatcagaatcattctctttattacattgtcc 113  Q
    |||||| |||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| ||||||||||||    
T  28956710 agtagacactgctggagaacattcataagttgtgtacattttttcttgtacacaacaatcagaatcgttctcttgattacattgtcc 28956624  T

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Target: chr7; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 19 - 167
Target Start/End: Complemental strand, 3618916 - 3618768
Alignment:
Q  19 ttagtatgagtagatactgatggtgaacattcataagttgtgtacatttttccttgtacacaacaatcagaatcattctctttattacattgtccagatg 118  Q
    ||||| ||||||||  |||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |  || |||||||| || |    
T  3618916 ttagtgtgagtagacgctgacggtgaacattgataagttgtgtacatttttccttgtacacaacaatcagagtcattctcctggttgcattgtccggaag 3618817  T
Q  119 gagctttctttcccctgattctaccgttcggacgacacttttgagcttc 167  Q
    ||||||| | |||  | ||||||||  | |||||||||| ||| |||||    
T  3618816 gagctttttctcctttaattctaccacttggacgacactgttgggcttc 3618768  T

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Target: chr7; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 27 - 122
Target Start/End: Complemental strand, 29113473 - 29113378
Alignment:
Q  27 agtagatactgatggtgaacattcataagttgtgtacatttttccttgtacacaacaatcagaatcattctctttattacattgtccagatggagc 122  Q
    ||||||||||||||| |||||||||||||||||  |||||| ||||||||| |||||||||||||||||||||| ||| |||||| |||| |||||    
T  29113473 agtagatactgatggcgaacattcataagttgtacacatttgtccttgtacccaacaatcagaatcattctcttgattgcattgtgcagaaggagc 29113378  T

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Target: chr7; HSP #12
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 19 - 113
Target Start/End: Complemental strand, 29101953 - 29101859
Alignment:
Q  19 ttagtatgagtagatactgatggtgaacattcataagttgtgtacatttttccttgtacacaacaatcagaatcattctctttattacattgtcc 113  Q
    ||||| |||||||||||||||||||| |||| ||| ||||||||||||||||| ||||||||||||||||| |||||||| |  |||||||||||    
T  29101953 ttagtgtgagtagatactgatggtgagcatttatatgttgtgtacatttttccctgtacacaacaatcagagtcattctcctggttacattgtcc 29101859  T

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Target: chr7; HSP #13
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 19 - 125
Target Start/End: Complemental strand, 29116098 - 29115992
Alignment:
Q  19 ttagtatgagtagatactgatggtgaacattcataagttgtgtacatttttccttgtacacaacaatcagaatcattctctttattacattgtccagatg 118  Q
    ||||| |||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||| |||||||| || |  || |||||||| || |    
T  29116098 ttagtgtgagtagatactgatggtgagcatttataagttgtgtacatttttccttgcacacaacaatctgaatcattttcctggttgcattgtccggaag 29115999  T
Q  119 gagcttt 125  Q
    |||||||    
T  29115998 gagcttt 29115992  T

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Target: chr7; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 83 - 167
Target Start/End: Original strand, 29064475 - 29064559
Alignment:
Q  83 aatcagaatcattctctttattacattgtccagatggagctttctttcccctgattctaccgttcggacgacacttttgagcttc 167  Q
    ||||||| ||||||||||| || |||||| ||||||| |||||||||||||| |||||||| || ||||||||||||||||||||    
T  29064475 aatcagagtcattctctttgttgcattgttcagatggtgctttctttcccctcattctaccatttggacgacacttttgagcttc 29064559  T

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Target: chr4 (Bit Score: 119; Significance: 7e-61; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 18 - 164
Target Start/End: Complemental strand, 11851517 - 11851371
Alignment:
Q  18 cttagtatgagtagatactgatggtgaacattcataagttgtgtacatttttccttgtacacaacaatcagaatcattctctttattacattgtccagat 117  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| || |||||||| |||    
T  11851517 cttagtatgagtagacactgatggtgaacattcataagttgtgtacatctttccttgtacacaacaatcagagtcattctctttgttgcattgtcccgat 11851418  T
Q  118 ggagctttctttcccctgattctaccgttcggacgacacttttgagc 164  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||    
T  11851417 ggagctttctttcccctgattctaccgtttggacgacacttttgagc 11851371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 25 - 155
Target Start/End: Complemental strand, 11854224 - 11854094
Alignment:
Q  25 tgagtagatactgatggtgaacattcataagttgtgtacatttttccttgtacacaacaatcagaatcattctctttattacattgtccagatggagctt 124  Q
    |||||||| |||||||| |||||| |||| |||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||| |  |||||||    
T  11854224 tgagtagacactgatggagaacatacatatgttgtgtacatttttccttgtacacaacaatcagaatcgttctcttgattgcattgtcctggaggagctt 11854125  T
Q  125 tctttcccctgattctaccgttcggacgaca 155  Q
    ||||||| || ||||||||| | ||||||||    
T  11854124 tctttcctctaattctaccgcttggacgaca 11854094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 19 - 167
Target Start/End: Original strand, 11850178 - 11850326
Alignment:
Q  19 ttagtatgagtagatactgatggtgaacattcataagttgtgtacatttttccttgtacacaacaatcagaatcattctctttattacattgtccagatg 118  Q
    ||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| | |||||||| |  ||||||||||  || |    
T  11850178 ttagtgtgagtagatactgatggtgaacatttataagttgtgtacatttttccctgtacacaacaatcaaagtcattctcctggttacattgtcttgaag 11850277  T
Q  119 gagctttctttcccctgattctaccgttcggacgacacttttgagcttc 167  Q
    ||||||| | |||  | ||||||||  | |||||||||| |||||||||    
T  11850278 gagctttttctcctttaattctaccacttggacgacactgttgagcttc 11850326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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