View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11629_low_17 (Length: 250)
Name: NF11629_low_17
Description: NF11629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11629_low_17 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 26630153 - 26629914
Alignment:
| Q |
1 |
taggagtaccctttgtggatgtattgaagaaagctggagttcttcctggtatcaaggttgacaagggaaccgttgaacttgccggcacaaacggagaaac |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26630153 |
taggagtaccctttgtggatgtgttgaagaaagctggagttcttcctggtatcaaggttgacaagggaaccgttgaacttgccggcacaaacggagaaac |
26630054 |
T |
|
| Q |
101 |
cacaactcaaggtttggatgaccttggtcagaggtgcaagaagtactatgaagccggtgcaaggttcgctaaatggcgcgccgtgctaaagatcggtcca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
26630053 |
cacaactcaaggtttggatgaccttggtcagaggtgcaagaaatactatgaagctggtgcaaggtttgctaaatggcgcgccgtgctaaagatcggtcca |
26629954 |
T |
|
| Q |
201 |
aatgaaccatctcccttgtcaatccacgaaaacgcctatg |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26629953 |
aatgaaccatctcccttgtcaatccacgaaaacgcctatg |
26629914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 212
Target Start/End: Complemental strand, 29233974 - 29233774
Alignment:
| Q |
12 |
tttgtggatgtattgaagaaagctggagttcttcctggtatcaaggttgacaagggaaccgttgaacttgccggcacaaacggagaaaccacaactcaag |
111 |
Q |
| |
|
||||| ||||| ||||| ||||||| || |||||||||||||||||||||||||| |||||||| |||||||| || | ||||||||||| ||||| | |
|
|
| T |
29233974 |
tttgttgatgtcttgaacgaagctggtgtgcttcctggtatcaaggttgacaagggtaccgttgagcttgccggaactgatggagaaaccaccactcagg |
29233875 |
T |
|
| Q |
112 |
gtttggatgaccttggtcagaggtgcaagaagtactatgaagccggtgcaaggttcgctaaatggcgcgccgtgctaaagatcggtccaaatgaaccatc |
211 |
Q |
| |
|
|| | |||| |||||| | || |||||||||||||| |||||| | |||||||||||||| || ||||| || ||||| || ||||| ||||| |
|
|
| T |
29233874 |
gtcttgatggacttggtgctcgttgtgctaagtactatgaagctggtgcacgtttcgctaaatggcgtgcagtgcttaaaatcggccccaatgagccatc |
29233775 |
T |
|
| Q |
212 |
t |
212 |
Q |
| |
|
| |
|
|
| T |
29233774 |
t |
29233774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 212
Target Start/End: Complemental strand, 29237724 - 29237524
Alignment:
| Q |
12 |
tttgtggatgtattgaagaaagctggagttcttcctggtatcaaggttgacaagggaaccgttgaacttgccggcacaaacggagaaaccacaactcaag |
111 |
Q |
| |
|
||||| ||||| ||||| ||||||| || |||||||||||||||||||||||||| |||||||| |||||||| || | ||||||||||| ||||| | |
|
|
| T |
29237724 |
tttgttgatgtcttgaacgaagctggtgtgcttcctggtatcaaggttgacaagggtaccgttgagcttgccggaactgatggagaaaccaccactcagg |
29237625 |
T |
|
| Q |
112 |
gtttggatgaccttggtcagaggtgcaagaagtactatgaagccggtgcaaggttcgctaaatggcgcgccgtgctaaagatcggtccaaatgaaccatc |
211 |
Q |
| |
|
|| | |||| |||||| | || |||||||||||||| |||||| | |||||||||||||| || ||||| || ||||| || ||||| ||||| |
|
|
| T |
29237624 |
gtcttgatggacttggtgctcgttgtgctaagtactatgaagctggtgcacgtttcgctaaatggcgtgcagtgcttaaaatcggccccaatgagccatc |
29237525 |
T |
|
| Q |
212 |
t |
212 |
Q |
| |
|
| |
|
|
| T |
29237524 |
t |
29237524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 160
Target Start/End: Original strand, 42027981 - 42028045
Alignment:
| Q |
96 |
gaaaccacaactcaaggtttggatgaccttggtcagaggtgcaagaagtactatgaagccggtgc |
160 |
Q |
| |
|
|||||||| |||||||||||||| | ||||||||| | ||| |||||||||||||||| ||||| |
|
|
| T |
42027981 |
gaaaccaccactcaaggtttggacgggcttggtcagcgttgccagaagtactatgaagctggtgc |
42028045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University