View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11629_low_2 (Length: 638)

Name: NF11629_low_2
Description: NF11629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11629_low_2
NF11629_low_2
[»] chr5 (7 HSPs)
chr5 (186-477)||(37498327-37498655)
chr5 (18-148)||(4215218-4215347)
chr5 (58-147)||(18587463-18587553)
chr5 (18-88)||(37498257-37498327)
chr5 (554-621)||(37498731-37498798)
chr5 (19-111)||(27172880-27172973)
chr5 (63-115)||(39040636-39040689)
[»] chr7 (7 HSPs)
chr7 (18-149)||(2576964-2577094)
chr7 (60-148)||(26389159-26389247)
chr7 (18-147)||(18446570-18446697)
chr7 (102-149)||(1773696-1773743)
chr7 (92-149)||(26387890-26387947)
chr7 (18-147)||(1715756-1715881)
chr7 (60-99)||(1773621-1773661)
[»] chr8 (12 HSPs)
chr8 (18-147)||(31909152-31909281)
chr8 (18-148)||(3785844-3785973)
chr8 (18-147)||(3479031-3479159)
chr8 (27-148)||(19472546-19472665)
chr8 (27-148)||(19543471-19543590)
chr8 (27-148)||(19589106-19589225)
chr8 (18-112)||(3788554-3788647)
chr8 (63-115)||(4678093-4678146)
chr8 (63-115)||(4676148-4676201)
chr8 (106-147)||(15232220-15232261)
chr8 (57-115)||(12062783-12062843)
chr8 (59-102)||(35416184-35416228)
[»] chr4 (3 HSPs)
chr4 (165-345)||(42602820-42603015)
chr4 (18-147)||(46432428-46432556)
chr4 (18-115)||(55849473-55849572)
[»] chr1 (5 HSPs)
chr1 (34-140)||(16385556-16385661)
chr1 (18-147)||(27356073-27356202)
chr1 (87-148)||(12685085-12685146)
chr1 (18-115)||(20225544-20225643)
chr1 (565-598)||(31321195-31321228)
[»] chr6 (3 HSPs)
chr6 (18-146)||(21146873-21147003)
chr6 (60-147)||(33638874-33638960)
chr6 (18-115)||(9664685-9664784)
[»] scaffold0016 (1 HSPs)
scaffold0016 (18-147)||(48375-48505)
[»] chr2 (2 HSPs)
chr2 (63-147)||(20509203-20509288)
chr2 (18-115)||(26608059-26608159)
[»] chr3 (4 HSPs)
chr3 (59-115)||(35610815-35610872)
chr3 (18-115)||(447125-447222)
chr3 (58-115)||(20871331-20871390)
chr3 (59-112)||(24595226-24595280)


Alignment Details
Target: chr5 (Bit Score: 166; Significance: 2e-88; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 186 - 477
Target Start/End: Original strand, 37498327 - 37498655
Alignment:
Q  186 attgtagtacttgctttatgtcgacgtccgataatgtgaaccctttctttcccttcaaaagtcggcaacaacatctcattcgatgtgaaa---------- 275  Q
    |||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||              
T  37498327 attgtagtacttactttatgtcgaagtc-gataatgtgaaccctttctttcccttcaaaagtcgtcaacaacatctcattcgatgtgaaatgaagaaact 37498425  T
Q  276 ------ttggggtaacctggttcaaaagcctcaatgcagtgacaatttcatcatcgtccacaaccttgtcaaaatcaatgtgcaaaagaagcatgtgttt 369  Q
          |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||    
T  37498426 tggaaattggggtaacctggtttaaaagcctcaatgcagtgacaatttcatcatcgtccacaaccttgtcaaaatcgatgtgcaaaagaagcatgttttt 37498525  T
Q  370 gtgaaaagcatggaaattttacag----------------------tttagcataaatggaggacatagctagaagaaatggtgaaagtaagatgaaaat 447  Q
    ||||||| ||||| ||||||||||                      ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37498526 gtgaaaatcatgggaattttacagttttatgatctatttgtgaatttttagcataaatggaggacatagctagaagaaatggtgaaagtaagatgaaaat 37498625  T
Q  448 agaggaagaaagacgatggaagaaccaaag 477  Q
    ||||||||||||||||||||||||||||||    
T  37498626 agaggaagaaagacgatggaagaaccaaag 37498655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 18 - 148
Target Start/End: Complemental strand, 4215347 - 4215218
Alignment:
Q  18 gtattgatgatagttgaaatgatacaaaattgaatgaaggggtacaaatgagtcaacttgtgacttatatagtgactaaactagtaccctaactaactct 117  Q
    |||||||| ||||||||||||||| |||| ||||   || | |||||| |||||||||  ||||||||||||||||| ||||||| | ||||||||||||    
T  4215347 gtattgataatagttgaaatgatataaaagtgaaaagagagatacaaaagagtcaactaatgacttatatagtgactcaactagtgcactaactaactct 4215248  T
Q  118 aaaatgagtataactacctatatttcaacag 148  Q
     ||||||||||||||| ||||||||||||||    
T  4215247 -aaatgagtataactaactatatttcaacag 4215218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 58 - 147
Target Start/End: Original strand, 18587463 - 18587553
Alignment:
Q  58 ggtacaaatgagtcaac-ttgtgacttatatagtgactaaactagtaccctaactaactctaaaatgagtataactacctatatttcaaca 147  Q
    ||||||||||| ||||| |||||||||||||||| ||  ||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  18587463 ggtacaaatgaatcaaccttgtgacttatatagtaacctaactagtaccctaactaactctaaaataagtataactacctatatttcaaca 18587553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 37498257 - 37498327
Alignment:
Q  18 gtattgatgatagttgaaatgatacaaaattgaatgaaggggtacaaatgagtcaacttgtgacttatata 88  Q
    |||||||||||||||||||||||| |||| | || ||||||||||||||||||||||||||||||||||||    
T  37498257 gtattgatgatagttgaaatgatataaaagtaaaagaaggggtacaaatgagtcaacttgtgacttatata 37498327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 554 - 621
Target Start/End: Original strand, 37498731 - 37498798
Alignment:
Q  554 ccctctcacaatgtgactcatcatccaatttgccaaattagcggcgctagccattgccacatcatcct 621  Q
    |||||||||| ||||||||||||||||||||||||||| |||||||| | ||| ||||||||||||||    
T  37498731 ccctctcacattgtgactcatcatccaatttgccaaatcagcggcgccaaccactgccacatcatcct 37498798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 19 - 111
Target Start/End: Original strand, 27172880 - 27172973
Alignment:
Q  19 tattgatgatagttgaaatgatacaa-aattgaatgaaggggtacaaatgagtcaacttgtgacttatatagtgactaaactagtaccctaact 111  Q
    |||||||||||||||||||||||||| ||| |||   |  | ||||||||||||| ||  ||||||||||||| |||||||||||| |||||||    
T  27172880 tattgatgatagttgaaatgatacaagaatggaaaagatagttacaaatgagtcacctaatgacttatatagtaactaaactagtatcctaact 27172973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 63 - 115
Target Start/End: Original strand, 39040636 - 39040689
Alignment:
Q  63 aaatgagtcaac-ttgtgacttatatagtgactaaactagtaccctaactaact 115  Q
    |||||||||||| |||||||||||||||| ||||||||||||| ||||||||||    
T  39040636 aaatgagtcaaccttgtgacttatatagtaactaaactagtactctaactaact 39040689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 88; Significance: 6e-42; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 18 - 149
Target Start/End: Complemental strand, 2577094 - 2576964
Alignment:
Q  18 gtattgatgatagttgaaatgatacaaaattgaatgaaggggtacaaatgagtcaacttgtgacttatatagtgactaaactagtaccctaactaactct 117  Q
    |||||||| |||||||||||||||||| | ||||  ||| | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  2577094 gtattgataatagttgaaatgatacaagaatgaaa-aagtgatacaaatgagtcaacttgtgacttatatagtgactatactagtaccctaactaactct 2576996  T
Q  118 aaaatgagtataactacctatatttcaacaga 149  Q
    ||||||||||| |||| |||||||||||||||    
T  2576995 aaaatgagtatcactatctatatttcaacaga 2576964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 60 - 148
Target Start/End: Complemental strand, 26389247 - 26389159
Alignment:
Q  60 tacaaatgagtcaacttgtgacttatatagtgactaaactagtaccctaactaactctaaaatgagtataactacctatatttcaacag 148  Q
    |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  26389247 tacaaaagagtcaacttgtgacttatatagtgactaaactagtacactaactaactctaaaatgagtataactacctatatttcaacag 26389159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 18 - 147
Target Start/End: Complemental strand, 18446697 - 18446570
Alignment:
Q  18 gtattgatgatagttgaaatgatacaaaattgaatgaaggggtacaaatgagtcaacttgtgacttatatagtgactaaactagtaccctaactaactct 117  Q
    |||||||| |||||||||||||||||||| |||| ||| |  |||||| || |||||| |||||||||||||||||| ||||||| | ||||||||||||    
T  18446697 gtattgataatagttgaaatgatacaaaagtgaaagaaaga-tacaaa-gaatcaactagtgacttatatagtgactgaactagtgcactaactaactct 18446600  T
Q  118 aaaatgagtataactacctatatttcaaca 147  Q
    |||||||||||||||| |||||||||||||    
T  18446599 aaaatgagtataactaactatatttcaaca 18446570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 102 - 149
Target Start/End: Original strand, 1773696 - 1773743
Alignment:
Q  102 taccctaactaactctaaaatgagtataactacctatatttcaacaga 149  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||    
T  1773696 taccctaactaactctaaaatgagtataactacctataattcaacaga 1773743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 92 - 149
Target Start/End: Complemental strand, 26387947 - 26387890
Alignment:
Q  92 actaaactagtaccctaactaactctaaaatgagtataactacctatatttcaacaga 149  Q
    |||||||||||||  ||||||||| |||||||||||||||||| ||||||||||||||    
T  26387947 actaaactagtacattaactaactttaaaatgagtataactacttatatttcaacaga 26387890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 18 - 147
Target Start/End: Original strand, 1715756 - 1715881
Alignment:
Q  18 gtattgatgatagttgaaatgatacaaaattgaatgaaggggtacaaatgagtcaacttgtgacttatatagtgact-aaactagtaccctaactaactc 116  Q
    |||||||| ||||||||||||||| |||| ||||   || | |||||| ||||||||| || ||||||||||||||| ||||     | || ||||||||    
T  1715756 gtattgataatagttgaaatgatataaaagtgaaaagagagatacaaaagagtcaactagtaacttatatagtgactgaaac----gcactgactaactc 1715851  T
Q  117 taaaatgagtataactacctatatttcaaca 147  Q
    | ||||||||||||||| |||||||||||||    
T  1715852 t-aaatgagtataactaactatatttcaaca 1715881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 60 - 99
Target Start/End: Original strand, 1773621 - 1773661
Alignment:
Q  60 tacaaatgagtcaact-tgtgacttatatagtgactaaact 99  Q
    |||||||||||||||| ||||||| ||||||||||||||||    
T  1773621 tacaaatgagtcaactctgtgactaatatagtgactaaact 1773661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 87; Significance: 2e-41; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 18 - 147
Target Start/End: Original strand, 31909152 - 31909281
Alignment:
Q  18 gtattgatgatagttgaaatgatacaaaattgaatga-aggggtacaaatgagtcaacttgtgacttatatagtgactaaactagtaccctaactaactc 116  Q
    ||||||||||||||||||| |||||||||| ||| || || |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  31909152 gtattgatgatagttgaaaagatacaaaat-gaaagagagaggtacaaatgagtcaacttgtgacttatatagtgactaaactagtaccttaacttactc 31909250  T
Q  117 taaaatgagtataactacctatatttcaaca 147  Q
    |||||||||||| |||| |||||||||||||    
T  31909251 taaaatgagtattactatctatatttcaaca 31909281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 3785844 - 3785973
Alignment:
Q  18 gtattgatgatagttgaaatgatacaaaattgaatgaaggggtacaaatgagtcaacttgtgacttatatagtgactaaactagtaccctaactaactct 117  Q
    |||||||| |||||||||||||||||| | | ||  ||| | |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||    
T  3785844 gtattgataatagttgaaatgatacaagaataaaa-aagtgatacaaatgagtcaacttgtgacttatatagtgactatagtagtaccctaactaactct 3785942  T
Q  118 aaaatgagtataactacctatatttcaacag 148  Q
    ||||||||||| |||| ||||||||||||||    
T  3785943 aaaatgagtatcactatctatatttcaacag 3785973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 18 - 147
Target Start/End: Complemental strand, 3479159 - 3479031
Alignment:
Q  18 gtattgatgatagttgaaatgatacaaaattgaatgaaggggtacaaatgagtcaacttgtgacttatatagtgactaaactagtaccctaactaactct 117  Q
    |||||||| |||||||||| ||| ||| | |||| || | |||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||    
T  3479159 gtattgataatagttgaaaagatgcaacagtgaaaga-gcggtacaaatgagtcaacttgtgacttatgtagggactaaactaataccctaactaactct 3479061  T
Q  118 aaaatgagtataactacctatatttcaaca 147  Q
    |||||||||||||||| |||||||||||||    
T  3479060 aaaatgagtataactatctatatttcaaca 3479031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 27 - 148
Target Start/End: Original strand, 19472546 - 19472665
Alignment:
Q  27 atagttgaaatgatacaaaattgaatgaaggggtacaaatgagtcaacttgtgacttatatagtgactaaactagtaccc-taactaactctaaaatgag 125  Q
    |||||||||||||||||||| |||| ||   | |||||| |||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||||    
T  19472546 atagttgaaatgatacaaaagtgaaaga---gttacaaaagagtcaacttgtgactgatatagtgactacactagtacccttaactaactctaaaatgag 19472642  T
Q  126 tataactacctatatttcaacag 148  Q
    ||| |||| ||||||||||||||    
T  19472643 tattactatctatatttcaacag 19472665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 27 - 148
Target Start/End: Original strand, 19543471 - 19543590
Alignment:
Q  27 atagttgaaatgatacaaaattgaatgaaggggtacaaatgagtcaacttgtgacttatatagtgactaaactagtaccc-taactaactctaaaatgag 125  Q
    |||||||||||||||||||| |||| ||   | |||||| |||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||||    
T  19543471 atagttgaaatgatacaaaagtgaaaga---gttacaaaagagtcaacttgtgactgatatagtgactacactagtacccttaactaactctaaaatgag 19543567  T
Q  126 tataactacctatatttcaacag 148  Q
    ||| |||| ||||||||||||||    
T  19543568 tattactatctatatttcaacag 19543590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 27 - 148
Target Start/End: Complemental strand, 19589225 - 19589106
Alignment:
Q  27 atagttgaaatgatacaaaattgaatgaaggggtacaaatgagtcaacttgtgacttatatagtgactaaactagtaccc-taactaactctaaaatgag 125  Q
    |||||||||||||||||||| |||| ||   | |||||| |||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||||    
T  19589225 atagttgaaatgatacaaaagtgaaaga---gttacaaaagagtcaacttgtgactgatatagtgactacactagtacccttaactaactctaaaatgag 19589129  T
Q  126 tataactacctatatttcaacag 148  Q
    ||| |||| ||||||||||||||    
T  19589128 tattactatctatatttcaacag 19589106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 18 - 112
Target Start/End: Original strand, 3788554 - 3788647
Alignment:
Q  18 gtattgatgatagttgaaatgatacaaaattgaatgaaggggtacaaatgagtcaacttgtgacttatatagtgactaaactagtaccctaacta 112  Q
    |||||||| |||||||||||||||||| | ||||  ||| | |||||||| |||||||||||||||||| |||||||| ||||||||||||||||    
T  3788554 gtattgataatagttgaaatgatacaagaatgaaa-aagtgatacaaatgggtcaacttgtgacttatacagtgactatactagtaccctaacta 3788647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 63 - 115
Target Start/End: Complemental strand, 4678146 - 4678093
Alignment:
Q  63 aaatgagtcaac-ttgtgacttatatagtgactaaactagtaccctaactaact 115  Q
    |||||||||||| |||||||||||||||| ||||||||||||| ||||||||||    
T  4678146 aaatgagtcaaccttgtgacttatatagtaactaaactagtactctaactaact 4678093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 63 - 115
Target Start/End: Complemental strand, 4676201 - 4676148
Alignment:
Q  63 aaatgagtcaact-tgtgacttatatagtgactaaactagtaccctaactaact 115  Q
    ||||||||||||  ||||||||||||||| ||||||||||||| ||||||||||    
T  4676201 aaatgagtcaaccctgtgacttatatagtaactaaactagtactctaactaact 4676148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 106 - 147
Target Start/End: Complemental strand, 15232261 - 15232220
Alignment:
Q  106 ctaactaactctaaaatgagtataactacctatatttcaaca 147  Q
    |||| ||| |||||||||||||||||||||||||||||||||    
T  15232261 ctaattaaatctaaaatgagtataactacctatatttcaaca 15232220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 57 - 115
Target Start/End: Complemental strand, 12062843 - 12062783
Alignment:
Q  57 gggtacaaatgagtcaact-tgtgacttatatagtgact-aaactagtaccctaactaact 115  Q
    ||||||||||||||||||  ||||||||||||||| ||| ||||||||| | |||||||||    
T  12062843 gggtacaaatgagtcaaccatgtgacttatatagtaactaaaactagtatcttaactaact 12062783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 59 - 102
Target Start/End: Original strand, 35416184 - 35416228
Alignment:
Q  59 gtacaaatgagtcaact-tgtgacttatatagtgactaaactagt 102  Q
    ||||||||||||||||  ||||||||||||||| |||||||||||    
T  35416184 gtacaaatgagtcaaccatgtgacttatatagtcactaaactagt 35416228  T

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Target: chr4 (Bit Score: 76; Significance: 8e-35; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 165 - 345
Target Start/End: Original strand, 42602820 - 42603015
Alignment:
Q  165 aactttggaacaagctgggccattgtagtacttgctttatgtcgacgtccgataatgtgaaccctttctttcccttcaaaagtcggcaacaacatctcat 264  Q
    |||||||||| ||||| |||||||||||| ||||||||||||||| |||  |||| |||||||||||||||||||||||||| |  ||||||||||||||    
T  42602820 aactttggaagaagctaggccattgtagtccttgctttatgtcgaagtca-ataacgtgaaccctttctttcccttcaaaagccctcaacaacatctcat 42602918  T
Q  265 tcgatgtga----------------aattggggtaacctggttcaaaagcctcaatgcagtgacaatttcatcatcgtccacaaccttgtcaaaatc 345  Q
    |||||||||                |||||||||||||||||| | ||||||||||||||||||| |||||||||| ||||| ||| ||||||||||    
T  42602919 tcgatgtgaaatgaagaaacttgggaattggggtaacctggtttagaagcctcaatgcagtgacagtttcatcatcatccaccaccctgtcaaaatc 42603015  T

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Target: chr4; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 18 - 147
Target Start/End: Complemental strand, 46432556 - 46432428
Alignment:
Q  18 gtattgatgatagttgaaatgatacaaaattgaatgaaggggtacaaatgagtcaacttgtgacttatatagtgactaaactagtaccctaactaactct 117  Q
    |||||||| |||||  ||||||||||||| |||| || ||| || ||| ||||||||| ||||||| ||  ||||||||| |||| | ||||||||||||    
T  46432556 gtattgataatagtaaaaatgatacaaaagtgaaaga-gggatataaaagagtcaactagtgacttttacggtgactaaattagtgcactaactaactct 46432458  T
Q  118 aaaatgagtataactacctatatttcaaca 147  Q
    |||||||||||||||| ||| |||| ||||    
T  46432457 aaaatgagtataactaactacattttaaca 46432428  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 115
Target Start/End: Original strand, 55849473 - 55849572
Alignment:
Q  18 gtattgatgatagttgaaatgatacaa-aattgaatgaaggggtacaaatgagtcaact-tgtgacttatatagtgactaaactagtaccctaactaact 115  Q
    ||||||||||||||||||||||||||| ||| |||   |  |||||||||||||||||  ||||||||||||||| ||| |||||||  |||||||||||    
T  55849473 gtattgatgatagttgaaatgatacaagaatggaaaagataggtacaaatgagtcaaccatgtgacttatatagtaactgaactagtgtcctaactaact 55849572  T

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Target: chr1 (Bit Score: 75; Significance: 3e-34; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 34 - 140
Target Start/End: Complemental strand, 16385661 - 16385556
Alignment:
Q  34 aaatgatacaaaattgaatgaaggggtacaaatgagtcaacttgtgacttatatagtgactaaactagtaccctaactaactctaaaatgagtataacta 133  Q
    ||||||||||||| |||| || |  |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  16385661 aaatgatacaaaaatgaaaga-gatgtacaaatgagtcaacttgtgacttatacagtgactaaactagtaccctaactaactctaaaatgagtataacta 16385563  T
Q  134 cctatat 140  Q
     ||||||    
T  16385562 tctatat 16385556  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 18 - 147
Target Start/End: Original strand, 27356073 - 27356202
Alignment:
Q  18 gtattgatgatagttgaaatgatacaaaattgaatgaaggggtacaaatgagtcaacttgtgacttatatagtgactaaactagtaccctaactaactct 117  Q
    ||||||||||||||  ||||||||||||| |||| | || | |||| || | ||||||| || |||||| |||||||||| |||||| ||||||||| ||    
T  27356073 gtattgatgatagtgaaaatgatacaaaaatgaaag-agagatacatataattcaacttatgtcttatacagtgactaaattagtacactaactaacact 27356171  T
Q  118 -aaaatgagtataactacctatatttcaaca 147  Q
     ||||||| ||||||||||||||||| ||||    
T  27356172 aaaaatgactataactacctatattttaaca 27356202  T

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Target: chr1; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 87 - 148
Target Start/End: Complemental strand, 12685146 - 12685085
Alignment:
Q  87 tagtgactaaactagtaccctaactaactctaaaatgagtataactacctatatttcaacag 148  Q
    |||||||| |||| |||| |||||||||||||||||||||||||||| ||||||||||||||    
T  12685146 tagtgactgaactcgtacactaactaactctaaaatgagtataactaactatatttcaacag 12685085  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 18 - 115
Target Start/End: Original strand, 20225544 - 20225643
Alignment:
Q  18 gtattgatgatagttgaaatgatacaa-aattgaatgaaggggtacaaatgagtcaact-tgtgacttatatagtgactaaactagtaccctaactaact 115  Q
    |||||||||||| |||||||||||||| ||| |||   |  |||||||| ||||||||  ||||||||||||||| |||||||||||  |||||||||||    
T  20225544 gtattgatgataattgaaatgatacaagaatggaaaagataggtacaaaagagtcaaccatgtgacttatatagtaactaaactagtgtcctaactaact 20225643  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 565 - 598
Target Start/End: Complemental strand, 31321228 - 31321195
Alignment:
Q  565 tgtgactcatcatccaatttgccaaattagcggc 598  Q
    ||||||||||||||||||||||||||| ||||||    
T  31321228 tgtgactcatcatccaatttgccaaatcagcggc 31321195  T

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Target: chr6 (Bit Score: 64; Significance: 1e-27; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 18 - 146
Target Start/End: Original strand, 21146873 - 21147003
Alignment:
Q  18 gtattgatgatagttgaaatgatacaaaattgaatgaaggggtacaaatgagtcaacttgtgacttatat--agtgactaaactagtaccctaactaact 115  Q
    |||||||  |||||||||||||||||| | ||||   || ||||||||||||||||| |||||||||||   | |||| |||||||||||||||||||||    
T  21146873 gtattgaaaatagttgaaatgatacaagaatgaaaagagaggtacaaatgagtcaacatgtgacttatagtcattgacaaaactagtaccctaactaact 21146972  T
Q  116 ctaaaatgagtataactacctatatttcaac 146  Q
     ||||||||||||||||| ||||||||||||    
T  21146973 ttaaaatgagtataactatctatatttcaac 21147003  T

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Target: chr6; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 60 - 147
Target Start/End: Original strand, 33638874 - 33638960
Alignment:
Q  60 tacaaatgagtcaacttgtgacttatatagtgactaaactagtaccctaactaactctaaaatgagtataactacctatatttcaaca 147  Q
    |||||| |||||||||| |||||||||||  || ||||||| ||| ||||||||||||||||| ||||||||| ||||||||||||||    
T  33638874 tacaaaagagtcaacttatgacttatataacgattaaactaatacactaactaactctaaaataagtataact-cctatatttcaaca 33638960  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 18 - 115
Target Start/End: Original strand, 9664685 - 9664784
Alignment:
Q  18 gtattgatgatagttgaaatgatacaaaattgaatga-aggggtacaaatgagtcaact-tgtgacttatatagtgactaaactagtaccctaactaact 115  Q
    |||||||| |||||||||||||||||| | ||||  | |  |||||||||||||||||  ||||||||||||||| |||||||||||  ||||| |||||    
T  9664685 gtattgattatagttgaaatgatacaagaatgaaaaagataggtacaaatgagtcaaccatgtgacttatatagtaactaaactagtgtcctaattaact 9664784  T

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Target: scaffold0016 (Bit Score: 63; Significance: 5e-27; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 18 - 147
Target Start/End: Complemental strand, 48505 - 48375
Alignment:
Q  18 gtattgatgatagttgaaatgatacaaaattgaatgaaggggtacaaatgagtcaacttgtgacttatatagtgactaaactagtaccct-aactaactc 116  Q
    |||||||| || ||||||  ||||||||||||||   |  | |||||| || ||||||||||||||||||||||| || |||| |||||| |||||||||    
T  48505 gtattgataattgttgaagggatacaaaattgaaaagatagttacaaaagaatcaacttgtgacttatatagtgaatacactaatacccttaactaactc 48406  T
Q  117 taaaatgagtataactacctatatttcaaca 147  Q
    |||||||||||||||||||||||||||||||    
T  48405 taaaatgagtataactacctatatttcaaca 48375  T

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Target: chr2 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 63 - 147
Target Start/End: Original strand, 20509203 - 20509288
Alignment:
Q  63 aaatgagtcaacttgtgacttatatagtgactaaactagta-ccctaactaactctaaaatgagtataactacctatatttcaaca 147  Q
    |||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||    
T  20509203 aaatgagtcaacttgtaacttatatattgactaaactagtacccctaactaactctaaaatgagtataactacttatattttaaca 20509288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 115
Target Start/End: Original strand, 26608059 - 26608159
Alignment:
Q  18 gtattgatgatagttgaaa-tgatacaaaattgaatga-aggggtacaaatgagtcaac-ttgtgacttatatagtgactaaactagtaccctaactaac 114  Q
    ||||||||||||||||||| |||||||| | ||||  | |  |||||| |||||||||| |||||||||||||||| ||| |||||||| ||||||||||    
T  26608059 gtattgatgatagttgaaaatgatacaagaatgaaaaagataggtacagatgagtcaaccttgtgacttatatagtaactgaactagtatcctaactaac 26608158  T
Q  115 t 115  Q
    |    
T  26608159 t 26608159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 6e-17; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 59 - 115
Target Start/End: Complemental strand, 35610872 - 35610815
Alignment:
Q  59 gtacaaatgagtcaac-ttgtgacttatatagtgactaaactagtaccctaactaact 115  Q
    |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  35610872 gtacaaatgagtcaaccttgtgacttatatagtaactaaactagtaccctaactaact 35610815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 18 - 115
Target Start/End: Original strand, 447125 - 447222
Alignment:
Q  18 gtattgatgatagttgaaatgatacaaaattgaatgaaggggtacaaatgagtcaactt-gtgacttatatagtgactaaactagtaccctaactaact 115  Q
    ||||| ||| |||||||||||||| |||| |||| || | ||||||||||||||||||| ||||||| ||||||  |||||||||||||||||| ||||    
T  447125 gtatttatggtagttgaaatgatagaaaaatgaaaga-gaggtacaaatgagtcaactttgtgacttctatagtatctaaactagtaccctaaccaact 447222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 115
Target Start/End: Complemental strand, 20871390 - 20871331
Alignment:
Q  58 ggtacaaatgagtcaact-tgtgacttatatagtgact-aaactagtaccctaactaact 115  Q
    |||||||||||||||||  ||||||||||||||| ||| ||||||||| |||||||||||    
T  20871390 ggtacaaatgagtcaaccatgtgacttatatagtaactaaaactagtatcctaactaact 20871331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 59 - 112
Target Start/End: Complemental strand, 24595280 - 24595226
Alignment:
Q  59 gtacaaatgagtcaact-tgtgacttatatagtgactaaactagtaccctaacta 112  Q
    ||||||||||||||||  ||||||||||||||| |||||||||||  ||||||||    
T  24595280 gtacaaatgagtcaaccatgtgacttatatagtaactaaactagtgtcctaacta 24595226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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