View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11629_low_3 (Length: 580)
Name: NF11629_low_3
Description: NF11629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11629_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 442; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 17 - 567
Target Start/End: Complemental strand, 25811120 - 25810568
Alignment:
| Q |
17 |
ataacatcctcttttcctgaggttatcatcagttggaagcttgttgtgaatcaccctccatatgataaaggctctagagggaggtatataagaattccac |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||||||||||||||||||| ||||||||||||||| |
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| T |
25811120 |
ataacatcctcttttcctgaggttatcatcagttggaagcttgttgtgaagcatcctccatgtgataaaggctctagagggaggaatataagaattccac |
25811021 |
T |
|
| Q |
117 |
aaaagtttattccagggcaccttctggctatagccattcagaaaatcataagccaacttgttagtgagattcccatcagtggcatgcttccaaataagct |
216 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25811020 |
aaaagtttagtccagggcaccttctggctatagccattcagaaaatcataagccagcttgttagtgagattcccatcagtggcatgcttccaaataagct |
25810921 |
T |
|
| Q |
217 |
tatcaggaatatcacaaaatggtaagctgattttgaggatcttgacagctatagaagcatctctattccaaacataatcaggaataatccaattattttc |
316 |
Q |
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|||| | |||||||||| ||||||| |||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||| ||||||||||||| |
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| T |
25810920 |
tatcggagatatcacaaactggtaaggtgattttgaggatcttgacagctagagcagcatctctattccaaatataatcaggaatattccaattattttc |
25810821 |
T |
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| Q |
317 |
ctcaatgcaatcagaaaccttcatgttgatagggtgaagaatagaatgaggaataccccaaagatctgca--atgggtctctctaaccaattgtcagtcc |
414 |
Q |
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|| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
25810820 |
cttaatgcaatcagaaaccttcatgttgatagggtgaagaagagaatgaggaataccccaaagatctgcaatatgggtctctctaaccaattgtcagtcc |
25810721 |
T |
|
| Q |
415 |
agaagtttatgcttctcccatttcccacagaccaaatagcttgctcaataatcaaattaacatgttttttcataccaggccacactgaagaagtaatata |
514 |
Q |
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| T |
25810720 |
aaaagtttatgcttctcccatttcccacaaaccaaatagcttactcaagaatcaaattaacatgttttttcataccaggccacactgaagatgtaatata |
25810621 |
T |
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| Q |
515 |
atgagccttaggatgcccattttgcagaaatcggattctacatatatgtgccc |
567 |
Q |
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|||||||||||||||||||||||||||||||| | ||||||||||||| |||| |
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| T |
25810620 |
atgagccttaggatgcccattttgcagaaatctggttctacatatatgagccc |
25810568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 115
Target Start/End: Complemental strand, 17136261 - 17136200
Alignment:
| Q |
54 |
agcttgttgtgaatcaccctccatatgataaaggctctagagggaggtatataagaattcca |
115 |
Q |
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| T |
17136261 |
agcttgttgtgaagcagcctccatgtgataaaggatctagatgggggaatataagagttcca |
17136200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 115
Target Start/End: Original strand, 6937396 - 6937457
Alignment:
| Q |
54 |
agcttgttgtgaatcaccctccatatgataaaggctctagagggaggtatataagaattcca |
115 |
Q |
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| T |
6937396 |
agcttgttgtgaagcagcctccatgtgataaaggatctagatgggggaatataagagttcca |
6937457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 71 - 107
Target Start/End: Complemental strand, 12403166 - 12403130
Alignment:
| Q |
71 |
cctccatatgataaaggctctagagggaggtatataa |
107 |
Q |
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||||||| |||||||||||||||||||||| |||||| |
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| T |
12403166 |
cctccatgtgataaaggctctagagggaggaatataa |
12403130 |
T |
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