View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11629_low_5 (Length: 475)
Name: NF11629_low_5
Description: NF11629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11629_low_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 1 - 459
Target Start/End: Complemental strand, 46737245 - 46736799
Alignment:
| Q |
1 |
tgaaaatattcttgatcctaatacagtgttgacagattggtggaggctagtgcaacatattcgtcggatacttcaaacagattgtgaagttagagtgtgt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46737245 |
tgaaaatattcttgatcctaatacagtgtagacagattggtggaggctagtgcaacatattcgtcggatacttcaaacagattgtgaagttagagtgtgt |
46737146 |
T |
|
| Q |
101 |
catgtgtaccgtgaaactaatggtagtgcagatgccttcattaatatggaatgtgatcatgatccatacatggttttctatgagcaacaacatcccctgt |
200 |
Q |
| |
|
||||||||||||||| |||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46737145 |
catgtgtaccgtgaagctaatggttgtgcagatgccttcattaatatggaatgcgatcatgatccatacatggttttctatgagcaacaacatcccctgt |
46737046 |
T |
|
| Q |
201 |
tgatatagcattcatccacgttctgttcaaaaaacaattgctccttttatcccatagcacacatccaatctctcaaacaacaaaacaagagatatcaatg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46737045 |
tgatatagcattcatccacgttctgttcaaaaaacaattgctccttttatcccatagcacacatccaatctctcaaacaacaaaacaagagatatcaatg |
46736946 |
T |
|
| Q |
301 |
ctcatgagtcatgaatgcatagacgacacattgagtatcccataaatcaatgactcacaataccagcaagcaacacaatactagttcaatatctttttca |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46736945 |
ctcatgagtcatgaatgcatagacgacacattgagtatcccataaatcaatgactcacaataccagcaagcaacacaatactagttcaat---------- |
46736856 |
T |
|
| Q |
401 |
atatctaatatagaatatatatgaagtcaactagtaaattgacaagcaagccaacaaat |
459 |
Q |
| |
|
|||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
46736855 |
--atctaatataaaatatatatgaagtcaaccagtaaattgacaagcaagccaacaaat |
46736799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University