View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11629_low_6 (Length: 445)
Name: NF11629_low_6
Description: NF11629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11629_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 347; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 24 - 436
Target Start/End: Complemental strand, 41074311 - 41073900
Alignment:
| Q |
24 |
tacaccaaaaaacgccactaaaaaacgacatgtcgacacaagtaaaataatgtgagaaaataaatgaatttgatgacatcacactcaatatcactcttcc |
123 |
Q |
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| T |
41074311 |
tacaccaaaaaacgccactaaaaaacgacatgtcgacacaagtaaaataatgtgagaaaataaatgaatttgatgacatcacactcaatatcactcttcc |
41074212 |
T |
|
| Q |
124 |
tatcaaatatcgggacattacaactctcaatgtcaccaatggaaaaggaaaaattagtgatgaatatttatgattgaaaaaattaaatctctcactaatc |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41074211 |
tatcaaatatcgggacattacaactctcaatgtcaccaatggaaaaggaaaaattagtgatgaatatttatgattgaaaaaattaaatctctcactaatc |
41074112 |
T |
|
| Q |
224 |
tacttatttcactcttaagcaagccatgacttaaaacttctaagcctatgacctaggacacaagtaatgatttgagaaggatga---tgatctatgaagt |
320 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
41074111 |
tacttatttcactcttaagcaagccatgacttaaaacttctaagcgtatgacctaggacacaagtaatgatttgagaaggatgatgatgatctatgaagt |
41074012 |
T |
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| Q |
321 |
acggaagcttcttagattaggcgtgtccggtgttggacatgtat-gtgtctggcaccaacacgtataattacagtgaattctaaaaattattagctacct |
419 |
Q |
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| T |
41074011 |
acggacgcttcttagattagacgtgtccggtgttggatatgtatcatgtctgacaccaacacgtata-----agtgaattctaaaaattatttgctacct |
41073917 |
T |
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| Q |
420 |
gaatggtgtcttcttct |
436 |
Q |
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| T |
41073916 |
gaatggtgtcttcttct |
41073900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 199 - 241
Target Start/End: Complemental strand, 41074429 - 41074387
Alignment:
| Q |
199 |
gaaaaaattaaatctctcactaatctacttatttcactcttaa |
241 |
Q |
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|||||||||||||||||||| | |||||||||||||||||||| |
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| T |
41074429 |
gaaaaaattaaatctctcacaattctacttatttcactcttaa |
41074387 |
T |
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