View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11629_low_7 (Length: 439)
Name: NF11629_low_7
Description: NF11629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11629_low_7 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 22 - 419
Target Start/End: Original strand, 40199197 - 40199594
Alignment:
| Q |
22 |
atgaataactaagctaaatacttccaaaatttcattatgtttaccttcaggataccctagatctagaatcttattttgcttctaatttgaatcctaagca |
121 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40199197 |
atgaataactaagctaagtacttccaaaatttcattatgtttaccttcaggataccctagatctagaatcttattttgcttctaatttgaatcctaagca |
40199296 |
T |
|
| Q |
122 |
ctccttacaatcggatgaaagagcatagtgttgtgtatgactcatatttactgataagtggtcagtcactcgagcgtagcgaatcaaagagagtggagct |
221 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
40199297 |
ctccttacaatcggatgaaagagcatagtgttgtgtatgactcatatttactgataagtggtcagtcactcaagcgtagcgaagcaaagagagtggagct |
40199396 |
T |
|
| Q |
222 |
gaaagcataacgagggaagtggagcgagtgacaaacttgtaatctggactgtagtaatttgtaaccctaagcttacttaatagacatcacaatagctact |
321 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40199397 |
gaaagcataacgaaggaagtggagcgagtgacaaacttgtaatctggactgtagtaatttgtaaccctaagcttacttaatagacatcacaatagctact |
40199496 |
T |
|
| Q |
322 |
ctgctgtcgaagacataggacaattggctggcctctgtgatcaatcggctgcgctcttgtgtgtgttttattcattttctttaaatctggattctctg |
419 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
40199497 |
ctgctgtcgaagacataggacaattggctggcctctgtgatcaatcggctgcgctcttgtgtgtgttttattcattttctttaaatctggattttctg |
40199594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 150 - 191
Target Start/End: Complemental strand, 15210583 - 15210543
Alignment:
| Q |
150 |
tgttgtgtatgactcatatttactgataagtggtcagtcact |
191 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
15210583 |
tgttgtgtatgactcatatttactgataagtgg-cagtcact |
15210543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University