View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11629_low_8 (Length: 432)

Name: NF11629_low_8
Description: NF11629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11629_low_8
NF11629_low_8
[»] chr4 (3 HSPs)
chr4 (1-286)||(29564196-29564490)
chr4 (367-413)||(29564597-29564643)
chr4 (333-370)||(29564500-29564537)


Alignment Details
Target: chr4 (Bit Score: 155; Significance: 4e-82; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 1 - 286
Target Start/End: Original strand, 29564196 - 29564490
Alignment:
Q  1 tttgaaatgacaataataacaacaacgttagacactgtgcnnnnnnngtgactgttatttatttcccaacgtcgagcactgcctcttcatgggaatttga 100  Q
    ||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29564196 tttgaaatgacaataataacaacaacgttagacactgtgctttttgtgtgactgttatttatttcccaacgtcgagcactgcctcttcatgggaatttga 29564295  T
Q  101 aaaagacttgtctggnnnnnnnnnnnnnnnnnnnnnnnacccaatatgccattcattggtcaaccataaattat-attttaaatttagttaat---catt 196  Q
    |||||||||||||||                       |||||||||||||||||||||||||||||||||||| ||||||||||||||||||   ||||    
T  29564296 aaaagacttgtctggtttttgtttttgtttgtctttttacccaatatgccattcattggtcaaccataaattattattttaaatttagttaataatcatt 29564395  T
Q  197 ttcactttatttcattctattttggtttacacttagttctac-----attattattactccctctgtctcatatttttccaattaatgtgttgaa 286  Q
    |||||||||||||||||||||||||||||||||||||| |||     ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  29564396 ttcactttatttcattctattttggtttacacttagttgtacattatattattattactccctctgtctcatatatttccaattaatgtgttgaa 29564490  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 367 - 413
Target Start/End: Original strand, 29564597 - 29564643
Alignment:
Q  367 aagatatctttgtcaatgtcatgctgtttcacacctattgtcagtca 413  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  29564597 aagatatctttgtcaatgtcatgctgtttcacacctattgtcagtca 29564643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 333 - 370
Target Start/End: Original strand, 29564500 - 29564537
Alignment:
Q  333 tggtataaatgtaaatttagaagtgtttaaatataaga 370  Q
    ||||||||||||||||||||||||||||||||||||||    
T  29564500 tggtataaatgtaaatttagaagtgtttaaatataaga 29564537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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