View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11629_low_9 (Length: 407)

Name: NF11629_low_9
Description: NF11629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11629_low_9
NF11629_low_9
[»] chr6 (8 HSPs)
chr6 (17-407)||(20205274-20205664)
chr6 (17-407)||(22099297-22099687)
chr6 (17-407)||(21971835-21972228)
chr6 (51-395)||(20085966-20086310)
chr6 (51-395)||(22204853-22205197)
chr6 (58-395)||(20237879-20238216)
chr6 (58-395)||(22131863-22132200)
chr6 (53-395)||(24385068-24385409)
[»] scaffold0264 (1 HSPs)
scaffold0264 (17-395)||(15915-16293)
[»] scaffold0074 (1 HSPs)
scaffold0074 (17-395)||(47648-48023)
[»] scaffold0007 (1 HSPs)
scaffold0007 (47-395)||(5199-5550)


Alignment Details
Target: chr6 (Bit Score: 387; Significance: 0; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 17 - 407
Target Start/End: Complemental strand, 20205664 - 20205274
Alignment:
17 agtttgcaaccaaagaagcacaagattcggaaaatcagaccctttactgtctagctcagtgcacgccggatttgtcgcctaatgattgcagaaactgtct 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
20205664 agtttgcaaccaaagaagcacaagattcggaaaatcagaccctttactgtctagctcagtgcacgccggatttgtcgcctaatgattgcagaacctgtct 20205565  T
117 cagtagtgctattgagaaagtttcaaagagttgtgatggaaaggtgggagggagatttctttatcctagctgtaatgtaaggtatgaattatatccattt 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
20205564 cagtagtgctattgagaaagtttcaaagagttgtgatggaaaggtgggagggagatttctttatcctagctgtaatgtaaggtatgaattatatccattt 20205465  T
217 tataggtctattactgttctttcaccaaatgagctagctcctcgaacaaatgattccaaacaagattctaaactttcagaagaatcattttatctttcct 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
20205464 tataggtctattactgttctttcaccaaatgagctagctcctcgaacaaatgattccaaacaagattctaaactttcagaagaatcattttatctttcct 20205365  T
317 ataattgctcaagaaaccacaacacaatcactgacaaaaacatcaaattacttctgtcttatttgttgtcgaacgccaccatcggcaaaaa 407  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
20205364 ataattgctcaagaaaccacaacacaatcactgacaaaaacatcaaattacttctgtcttatttgttgtcgaacgccaccatcggcaaaaa 20205274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 17 - 407
Target Start/End: Complemental strand, 22099687 - 22099297
Alignment:
17 agtttgcaaccaaagaagcacaagattcggaaaatcagaccctttactgtctagctcagtgcacgccggatttgtcgcctaatgattgcagaaactgtct 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
22099687 agtttgcaaccaaagaagcacaagattcggaaaatcagaccctttactgtctagctcagtgcacgccggatttgtcgcctaatgattgcagaacctgtct 22099588  T
117 cagtagtgctattgagaaagtttcaaagagttgtgatggaaaggtgggagggagatttctttatcctagctgtaatgtaaggtatgaattatatccattt 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
22099587 cagtagtgctattgagaaagtttcaaagagttgtgatggaaaggtgggagggagatttctttatcctagctgtaatgtaaggtatgaattatatccattt 22099488  T
217 tataggtctattactgttctttcaccaaatgagctagctcctcgaacaaatgattccaaacaagattctaaactttcagaagaatcattttatctttcct 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
22099487 tataggtctattactgttctttcaccaaatgagctagctcctcgaacaaatgattccaaacaagattctaaactttcagaagaatcattttatctttcct 22099388  T
317 ataattgctcaagaaaccacaacacaatcactgacaaaaacatcaaattacttctgtcttatttgttgtcgaacgccaccatcggcaaaaa 407  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
22099387 ataattgctcaagaaaccacaacacaatcactgacaaaaacatcaaattacttctgtcttatttgttgtcgaacgccaccatcggcaaaaa 22099297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 17 - 407
Target Start/End: Complemental strand, 21972228 - 21971835
Alignment:
17 agtttgcaaccaaagaagcacaagattcggaaaatcagaccctttactgtctagctcagtgcacgccggatttgtcgcctaatgattgcagaaactgtct 116  Q
    |||||||||| |||||||||| || |||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| ||||||    
21972228 agtttgcaacaaaagaagcacgagtttcggaaaatcagaccctttacagtctagctcagtgcacgctggatttgtcgcctaatgattgcagaacctgtct 21972129  T
117 cagtagtgctattgagaaagtttcaaagagttgtgatggaaaggtgggagggagatttctttatcctagctgtaatgtaaggtatgaattatatccattt 216  Q
    || |||||||||||||| | ||||| | || |||| ||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||    
21972128 cactagtgctattgagacactttcacaaagctgtgttggaaaggttggtgggagatttctttatcctagctgtaatgttaggtatgaattatatccattt 21972029  T
217 tataggtctattactgttctttcaccaaatgagctagctcctcgaacaaatgattccaaacaagattctaa---actttcagaagaatcattttatcttt 313  Q
    |||||||||| |  ||||||||| ||||||||||| ||||||| |||||||||||||| ||||||||||||   ||||||||||||  ||||||||||||    
21972028 tataggtctacttatgttctttccccaaatgagcttgctcctcaaacaaatgattccatacaagattctaaaatactttcagaagatccattttatcttt 21971929  T
314 cctataattgctcaagaaaccacaacacaatcactgacaaaaacatcaaattacttctgtcttatttgttgtcgaacgccaccatcggcaaaaa 407  Q
    |||||||||||||||||||  |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
21971928 cctataattgctcaagaaattacaatacaatcactgacaaaaacatcaaactacttctgtcttatttgttgtcgaacgccaccatcggcaaaaa 21971835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 51 - 395
Target Start/End: Complemental strand, 20086310 - 20085966
Alignment:
51 tcagaccctttactgtctagctcagtgcacgccggatttgtcgcctaatgattgcagaaactgtctcagtagtgctattgagaaagtttcaaagagttgt 150  Q
    |||||||||||||||||||||||||||||||||||| ||||| ||   ||||||||||| |||||||| |||||||||||||||| || | |   |||||    
20086310 tcagaccctttactgtctagctcagtgcacgccggacttgtcacccggtgattgcagaacctgtctcaatagtgctattgagaaacttcctagctgttgt 20086211  T
151 gatggaaaggtgggagggagatttctttatcctagctgtaatgtaaggtatgaattatatccattttataggtctattactgttctttcaccaaatgagc 250  Q
    |||||||||||||| |||||| |||||| ||||||||||||||| ||||||||||||||||| |||||||||||||||| || || ||| ||||||||||    
20086210 gatggaaaggtgggtgggagagttctttttcctagctgtaatgttaggtatgaattatatcctttttataggtctattaatgctccttcgccaaatgagc 20086111  T
251 tagctcctcgaacaaatgattccaaacaagattctaaactttcagaagaatcattttatctttcctataattgctcaagaaaccacaacacaatcactga 350  Q
    | | ||||| ||||||| |||| || |||||||||| | ||||| ||||  || ||||||||||||||||||||||||||||| |||  ||||||||| |    
20086110 ttgttcctcaaacaaatcattcaaaccaagattctagattttcacaagatccaatttatctttcctataattgctcaagaaacaacagtacaatcactaa 20086011  T
351 caaaaacatcaaattacttctgtcttatttgttgtcgaacgccac 395  Q
    ||| ||| ||||||||||||| |||||| |||  || ||||||||    
20086010 caataacttcaaattacttctctcttatctgtcctccaacgccac 20085966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 51 - 395
Target Start/End: Original strand, 22204853 - 22205197
Alignment:
51 tcagaccctttactgtctagctcagtgcacgccggatttgtcgcctaatgattgcagaaactgtctcagtagtgctattgagaaagtttcaaagagttgt 150  Q
    ||||||||||||||| |||||||||||||||||||| ||||| ||   ||||||||||| |||||| | ||||||||||||| || || | |   |||||    
22204853 tcagaccctttactgcctagctcagtgcacgccggacttgtcacccggtgattgcagaacctgtcttaatagtgctattgaggaacttcctagctgttgt 22204952  T
151 gatggaaaggtgggagggagatttctttatcctagctgtaatgtaaggtatgaattatatccattttataggtctattactgttctttcaccaaatgagc 250  Q
    |||||||||||||| | |||| || ||| ||||||||||||| | ||||||||| ||||||| |||||||||||||||| || || ||||||||||||||    
22204953 gatggaaaggtgggtgcgagagttgtttttcctagctgtaatattaggtatgaactatatcctttttataggtctattaatgctccttcaccaaatgagc 22205052  T
251 tagctcctcgaacaaatgattccaaacaagattctaaactttcagaagaatcattttatctttcctataattgctcaagaaaccacaacacaatcactga 350  Q
    | | ||||| ||||||| |||| |  |||||||||| | ||||| ||||  ||||||||||||||||||||||||||||||||||||  | ||||||| |    
22205053 ttgttcctcaaacaaatcattcaacccaagattctagattttcacaagatccattttatctttcctataattgctcaagaaaccacagtaaaatcactaa 22205152  T
351 caaaaacatcaaattacttctgtcttatttgttgtcgaacgccac 395  Q
    ||||||| ||||||||||||| ||||||||||  || ||||||||    
22205153 caaaaacttcaaattacttctctcttatttgtcctccaacgccac 22205197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 58 - 395
Target Start/End: Complemental strand, 20238216 - 20237879
Alignment:
58 ctttactgtctagctcagtgcacgccggatttgtcgcctaatgattgcagaaactgtctcagtagtgctattgagaaagtttcaaagagttgtgatggaa 157  Q
    |||||||||||||||||||||||||| || ||||||   ||||||||||||| ||| ||| || ||||||||  |||| |||||||    | ||||||||    
20238216 ctttactgtctagctcagtgcacgccagacttgtcgttcaatgattgcagaacctgcctcggttgtgctattaggaaactttcaaatgtgtatgatggaa 20238117  T
158 aggtgggagggagatttctttatcctagctgtaatgtaaggtatgaattatatccattttataggtctattactgttctttcaccaaatgagctagctcc 257  Q
    ||  ||| ||||||  | | |||||||| |||||| | ||||||||  ||||||| |||||||| |||| || || || ||||| ||||||||| | |||    
20238116 agcagggtgggagaaatttatatcctagttgtaatattaggtatgagctatatcctttttatagatctactaatgctccttcactaaatgagcttgttcc 20238017  T
258 tcgaacaaatgattccaaacaagattctaaactttcagaagaatcattttatctttcctataattgctcaagaaaccacaacacaatcactgacaaaaac 357  Q
    || |||||||||||| ||||||||||||||  || || ||||  || ||||||||||| |||||||| ||||||||||||  ||||||||| ||||||||    
20238016 tcaaacaaatgattcaaaacaagattctaattttacacaagatccagtttatctttccgataattgcccaagaaaccacagtacaatcactaacaaaaac 20237917  T
358 atcaaattacttctgtcttatttgttgtcgaacgccac 395  Q
     ||||||||||||| ||||||||||  || ||||||||    
20237916 ttcaaattacttctctcttatttgtcttccaacgccac 20237879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 58 - 395
Target Start/End: Complemental strand, 22132200 - 22131863
Alignment:
58 ctttactgtctagctcagtgcacgccggatttgtcgcctaatgattgcagaaactgtctcagtagtgctattgagaaagtttcaaagagttgtgatggaa 157  Q
    |||||||||||||||||||||||||| || ||||||   ||||||||||||| ||| ||| || ||||||||  |||| |||||||    | ||||||||    
22132200 ctttactgtctagctcagtgcacgccagacttgtcgttcaatgattgcagaacctgcctcggttgtgctattaggaaactttcaaatgtgtatgatggaa 22132101  T
158 aggtgggagggagatttctttatcctagctgtaatgtaaggtatgaattatatccattttataggtctattactgttctttcaccaaatgagctagctcc 257  Q
    ||  ||| ||||||  | | |||||||| |||||| | ||||||||  ||||||| |||||||| |||| || || || ||||| ||||||||| | |||    
22132100 agcagggtgggagaaatttatatcctagttgtaatattaggtatgagctatatcctttttatagatctactaatgctccttcactaaatgagcttgttcc 22132001  T
258 tcgaacaaatgattccaaacaagattctaaactttcagaagaatcattttatctttcctataattgctcaagaaaccacaacacaatcactgacaaaaac 357  Q
    || |||||||||||| ||||||||||||||  || || ||||  || ||||||||||| |||||||| ||||||||||||  ||||||||| ||||||||    
22132000 tcaaacaaatgattcaaaacaagattctaattttacacaagatccagtttatctttccgataattgcccaagaaaccacagtacaatcactaacaaaaac 22131901  T
358 atcaaattacttctgtcttatttgttgtcgaacgccac 395  Q
     ||||||||||||| ||||||||||  || ||||||||    
22131900 ttcaaattacttctctcttatttgtcttccaacgccac 22131863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 53 - 395
Target Start/End: Original strand, 24385068 - 24385409
Alignment:
53 agaccctttactgtctagctcagtgcacgccggatttgtcgcctaatgattgcagaaactgtctcagtagtgctattgagaaagtttcaaagagttgtga 152  Q
    |||| ||||||| | |||||||||||||||| || ||||| |||||||||||||||| |||||||| ||||||||||||     || ||    |||||||    
24385068 agacgctttactatttagctcagtgcacgccagacttgtcccctaatgattgcagaacctgtctcaatagtgctattgaatctcttccactatgttgtga 24385167  T
153 tggaaaggtgggagggagatttctttatcctagctgtaatgtaaggtatgaattatatccattttataggtctattactgttctttcaccaaatgagcta 252  Q
    |||||||  ||| || ||| ||| || ||||||||||||  | ||||||||| ||| ||| |||||||  ||||||| || || |||| ||||||||||     
24385168 tggaaagcagggtgg-agagttccttttcctagctgtaacattaggtatgaactatttcctttttataaatctattattgctccttcatcaaatgagctt 24385266  T
253 gctcctcgaacaaatgattccaaacaagattctaaactttcagaagaatcattttatctttcctataattgctcaagaaaccacaacacaatcactgaca 352  Q
    | ||||| |||||||||||| ||||||||||||| | ||||| ||||  || |||||||||||||||||||||||||||||||||| | ||||||  ||     
24385267 gttcctcaaacaaatgattcaaaacaagattctagattttcacaagatccaatttatctttcctataattgctcaagaaaccacaatataatcacaaacg 24385366  T
353 aaaacatcaaattacttctgtcttatttgttgtcgaacgccac 395  Q
    | ||| ||||||||||||| |||||| |||  || ||||||||    
24385367 ataacttcaaattacttctctcttatctgtcctccaacgccac 24385409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0264 (Bit Score: 143; Significance: 5e-75; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 17 - 395
Target Start/End: Complemental strand, 16293 - 15915
Alignment:
17 agtttgcaaccaaagaagcacaagattcggaaaatcagaccctttactgtctagctcagtgcacgccggatttgtcgcctaatgattgcagaaactgtct 116  Q
    |||||||||| |||||||||| || |||| ||||||||||||| ||||||||||||||||||||||| || ||||| |||||  ||||||||| ||||||    
16293 agtttgcaacaaaagaagcacgagtttcgaaaaatcagaccctatactgtctagctcagtgcacgccagacttgtctcctaacaattgcagaacctgtct 16194  T
117 cagtagtgctattgagaaagtttcaaagagttgtgatggaaaggtgggagggagatttctttatcctagctgtaatgtaaggtatgaattatatccattt 216  Q
    |  || |||||||||     || |   | || || ||||||||||||| |||||||||||||  |||||||||||||| ||||||||| ||||||| |||    
16193 ctatactgctattgatcttcttcctctgtgtggttatggaaaggtgggtgggagatttcttttgcctagctgtaatgttaggtatgaactatatcctttt 16094  T
217 tataggtctattactgttctttcaccaaatgagctagctcctcgaacaaatgattccaaacaagattctaaactttcagaagaatcattttatctttcct 316  Q
    ||||||||||||| || || ||| ||||||||||| | ||||| ||||||| |||| || |||||||||| | ||||| ||||  || ||||||||||||    
16093 tataggtctattaatgctccttcgccaaatgagcttgttcctcaaacaaatcattcaaaccaagattctagattttcacaagatccaatttatctttcct 15994  T
317 ataattgctcaagaaaccacaacacaatcactgacaaaaacatcaaattacttctgtcttatttgttgtcgaacgccac 395  Q
    ||||||||||||||||| |||  ||||||||| |||| ||| ||||||||||||| |||||| |||  || ||||||||    
15993 ataattgctcaagaaacaacagtacaatcactaacaataacttcaaattacttctctcttatctgtcctccaacgccac 15915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 117; Significance: 2e-59; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 17 - 395
Target Start/End: Original strand, 47648 - 48023
Alignment:
17 agtttgcaaccaaagaagcacaagattcggaaaatcagaccctttactgtctagctcagtgcacgccggatttgtcgcctaatgattgcagaaactgtct 116  Q
    |||||||||| |||||||||| || |||| |||| |||||||||||||||||||||||||||||||| || ||||| |||||  ||||||||| ||||||    
47648 agtttgcaacaaaagaagcacgagtttcgaaaaaacagaccctttactgtctagctcagtgcacgccagacttgtctcctaacaattgcagaacctgtct 47747  T
117 cagtagtgctattgagaaagtttcaaagagttgtgatggaaaggtgggagggagatttctttatcctagctgtaatgtaaggtatgaattatatccattt 216  Q
    |  || |||||||||     || |  ||  || ||||||||||  ||| ||||   || ||| ||||||||||||||| ||||||||| ||||||| |||    
47748 ctatactgctattgattttcttgctcagctttttgatggaaagcagggtgggatggttttttttcctagctgtaatgttaggtatgaactatatcctttt 47847  T
217 tataggtctattactgttctttcaccaaatgagctagctcctcgaacaaatgattccaaacaagattctaaactttcagaagaatcattttatctttcct 316  Q
    ||||||||||| | |  |   |||||||||||||| | ||||| ||||||  |||| ||||||||||||| | ||||| ||||  || ||||||||||||    
47848 tataggtctatcaatact---tcaccaaatgagcttgttcctcaaacaaaacattcaaaacaagattctagattttcacaagatccaatttatctttcct 47944  T
317 ataattgctcaagaaaccacaacacaatcactgacaaaaacatcaaattacttctgtcttatttgttgtcgaacgccac 395  Q
    |||||||| ||||||||||||  ||||||||| | |||||| ||||||||||||| ||||||||||  || ||||||||    
47945 ataattgcccaagaaaccacagtacaatcactaagaaaaacttcaaattacttctctcttatttgtcctccaacgccac 48023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 114; Significance: 1e-57; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 47 - 395
Target Start/End: Original strand, 5199 - 5550
Alignment:
47 aaaatcagaccctttactgtctagctcagtgcacgccggatttgtcgcctaatgattgcagaaactgtctcagtagtgctattgagaaagtttcaaagag 146  Q
    ||||||||||||| ||||||||||  |||||||||||||| ||||| |||||  ||||||||| |||||||  ||| ||||||||  |  || | | |      
5199 aaaatcagaccctgtactgtctagaacagtgcacgccggacttgtcccctaacaattgcagaacctgtctccatagagctattgaatatcttcctatggt 5298  T
147 ttgtgatggaaaggtgggagggagatttctttatcctagctgtaatgtaaggtatgaattatatccattttataggtctat---tactgttctttcacca 243  Q
    |||||||||||||| ||| |||||| || ||| ||||||||||||| | ||||||||| ||||||| ||||||||||||||   ||||  |  |||||||    
5299 ttgtgatggaaaggagggtgggagagttgtttttcctagctgtaatattaggtatgaactatatcctttttataggtctatcaatactacttcttcacca 5398  T
244 aatgagctagctcctcgaacaaatgattccaaacaagattctaaactttcagaagaatcattttatctttcctataattgctcaagaaaccacaacacaa 343  Q
    |||||||| | ||||| ||||||  |||| ||||||||| ||| | ||||| ||||  | |||||||||||||||||||||||||||||||| |  ||||    
5399 aatgagcttgttcctcaaacaaactattcaaaacaagatactagattttcaaaagatcccttttatctttcctataattgctcaagaaaccaaagtacaa 5498  T
344 tcactgacaaaaacatcaaattacttctgtcttatttgttgtcgaacgccac 395  Q
    ||||| | |||||| ||||||||||||| ||||||||||  || ||||||||    
5499 tcactaagaaaaacttcaaattacttctctcttatttgtcctccaacgccac 5550  T

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