View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1162_high_2 (Length: 585)
Name: NF1162_high_2
Description: NF1162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1162_high_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 470; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 9 - 509
Target Start/End: Complemental strand, 49532172 - 49531674
Alignment:
| Q |
9 |
agcataggacgaaaagtgggattgaaacagtacatatgcaataaaagtttcaccagcacaagtttgataaaatccatagctaacttattaattaactact |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49532172 |
agcataggacgaaaagtgggattgaaacagtacatatgcaataaaagtttcaccagcacaagtttgataaaatccatagctaacttattaattaactact |
49532073 |
T |
|
| Q |
109 |
gaaataaatgagtgtagcaggtagggttatcttttttggctataaagatataatgtatgcatatgcaatgttgcaaacttgtgatccactctctaggctt |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49532072 |
gaaataaatgagtgtagcaggtagggttatcttttttggctataaagatataatgtatgcatatgcaatgttgcaaacttgtgatccactctctaggctt |
49531973 |
T |
|
| Q |
209 |
cactatagagttggcatatccacatgttatttattgacaactttgtttactatgtagaatgtaaagaaaaaagtaatgtatttccagctcaactaaaact |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
49531972 |
gactatagagttggcatatccacatgttatttattgacaactttgtttactatgtagaatgtaaag--aaaagtaatgtatttccagctcaactaaaact |
49531875 |
T |
|
| Q |
309 |
ttgtacggattgcttccatttttatgttgagaatggagaccatgggtccatttacgttataaagttttttcttattttcacgtgaattctaaactatacc |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49531874 |
ttgtacggattgcttccatttttatgttgagaatggtgaccatgggtccatttacgttataaagttttttcttattttcacgtgaattctaaactatacc |
49531775 |
T |
|
| Q |
409 |
aacacaattacacctttctgtagtgtaaagtacattttttctatgatataatgtaaggtaccactagtatctaacattcataatttttgtgtatttatca |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49531774 |
aacacaattacacctttctgtagtgtaaagtacattttatctatgatataatgtaaagtactactagtatctaacattcataatttttgtgtatttatca |
49531675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 525 - 585
Target Start/End: Complemental strand, 49531661 - 49531606
Alignment:
| Q |
525 |
agttaatgtctgtctattatattattgttaggagaataaatctaaaaggagagctcaacat |
585 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||| |
|
|
| T |
49531661 |
agttaatatctgtctattat-----tgttaggagaataaatctaaaaggatagctcaacat |
49531606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University