View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1162_high_3 (Length: 380)
Name: NF1162_high_3
Description: NF1162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1162_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 14 - 363
Target Start/End: Original strand, 52472248 - 52472588
Alignment:
| Q |
14 |
accacgacctttccgatggtctgcaagcaacccactctaaaaataatgtcaattccacttaagtattat---acaaaggcttcaatgtttacctctacct |
110 |
Q |
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| T |
52472248 |
accacgacctttccgatggtctgcaagcaacccactctaaaaataatgtcaattccacttaagtattattacacaaaggcttcaatgtttacctctacct |
52472347 |
T |
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| Q |
111 |
caccaaacagaatcaccgtttt--ttagcgttttccattggttgtgactctatgatcatctccttctttcttctaatagatcaatgtctagtagtagtag |
208 |
Q |
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| T |
52472348 |
caccaaacagaatcaccgttttttttagcgttttccattggttgtgactctatgatcatctccttctttcttctaatagatcaatgtc------tagtag |
52472441 |
T |
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| Q |
209 |
atatatcttcttcatctttccaactttcccacatatactttccttatattgggcttcctagggcccaaatccaacactttttcctttgtgttctccactt |
308 |
Q |
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| T |
52472442 |
atatatcttcttcatctttccaactttcccacatatactttccttatattgggcttcctagggcccaaatccaacactttttcctttgtg--------tt |
52472533 |
T |
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| Q |
309 |
ctccacctggcccctattctgaccctccatttctaacattctaatgactgcattg |
363 |
Q |
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| T |
52472534 |
ctccacctggcccctattctgaccctccatttctaacattctaatgactacattg |
52472588 |
T |
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