View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1162_high_4 (Length: 360)
Name: NF1162_high_4
Description: NF1162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1162_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 7 - 331
Target Start/End: Complemental strand, 4107645 - 4107321
Alignment:
| Q |
7 |
tccaacaatatggcaccaaagctgtaaacatccactttagccgtcactggaacattcttgaaccattcaggagctacatatcctcgcgttcctcggatca |
106 |
Q |
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| T |
4107645 |
tccaacaacatggcaccaaagctgtaaacatccactttagccgtcactggaacattcttgaaccattcaggagctacatatcctcgcgttcctcggatca |
4107546 |
T |
|
| Q |
107 |
tggtttttgttctactttgatcggccaacaacaatttagccaatccgaagtcagaaatctttgctgtgaagtactcatctatgagtatattttgaggctt |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4107545 |
tggtttttgttctactttgatcggccaacaacaatttagccaatccgaagtcagaaatctttgctgtgaagtactcatctatgagtatattttgaggctt |
4107446 |
T |
|
| Q |
207 |
tatgtcacaatgaatgatgggagtgtcacactcttcatgtaaatacaccaaccctcttgcaatccccaaagcaaatccaatcctttgattccaagtgggt |
306 |
Q |
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| T |
4107445 |
tatgtcacaatgaatgatgggagtgtcacactcttcatgtaaatacaccaaccctcttgcaatccccaaagcaaatccaatcctttgattccaagtgggt |
4107346 |
T |
|
| Q |
307 |
tttgtttgtccaaacaagatgtttg |
331 |
Q |
| |
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| T |
4107345 |
tttgtttgtccaaacaagatgtttg |
4107321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 10 - 331
Target Start/End: Complemental strand, 4130823 - 4130502
Alignment:
| Q |
10 |
aacaatatggcaccaaagctgtaaacatccactttagccgtcactggaacattcttgaaccattcaggagctacatatcctcgcgttcctcggatcatgg |
109 |
Q |
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| T |
4130823 |
aacaacatggcaccaaagctgtaaacatccactttagccgtcacagggacattcttgaaccattcaggagccacatatccccgcgttcctcggaccattg |
4130724 |
T |
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| Q |
110 |
tttttgttctactttgatcggccaacaacaatttagccaatccgaagtcagaaatctttgctgtgaagtactcatctatgagtatattttgaggctttat |
209 |
Q |
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| T |
4130723 |
tatttgttctactttgatcagccaacaacaacttggccaaaccaaagtcagagatctttgccgtaaaatactcatctatgagtatattttgaggctttat |
4130624 |
T |
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| Q |
210 |
gtcacaatgaatgatgggagtgtcacactcttcatgtaaatacaccaaccctcttgcaatccccaaagcaaatccaatcctttgattccaagtgggtttt |
309 |
Q |
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| T |
4130623 |
gtcgcaatgaatgataggagtgtcacactcttcatgtaaatacaccaaccctcttgcgatccccaaagcaaatccaaccctttgattccaaatgggtttg |
4130524 |
T |
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| Q |
310 |
gtttgtccaaacaagatgtttg |
331 |
Q |
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|||| ||| |||||||| |||| |
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| T |
4130523 |
gtttctccgaacaagatatttg |
4130502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 135 - 254
Target Start/End: Complemental strand, 3035872 - 3035753
Alignment:
| Q |
135 |
caacaatttagccaatccgaagtcagaaatctttgctgtgaagtactcatctatgagtatattttgaggctttatgtcacaatgaatgatgggagtgtca |
234 |
Q |
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|||||| || || ||||| || |||||||| |||| ||||||| ||||| | |||||| ||||||||||||||||||||||||||||| |||| |
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| T |
3035872 |
caacaactttgctaatccaaaatcagaaattcttgcattgaagtaatcatcaaggagtatgttttgaggctttatgtcacaatgaatgatcctagtgatg |
3035773 |
T |
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| Q |
235 |
cactcttcatgtaaatacac |
254 |
Q |
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| T |
3035772 |
cactcttcatgtaaatacac |
3035753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 148 - 254
Target Start/End: Original strand, 3070185 - 3070291
Alignment:
| Q |
148 |
aatccgaagtcagaaatctttgctgtgaagtactcatctatgagtatattttgaggctttatgtcacaatgaatgatgggagtgtcacactcttcatgta |
247 |
Q |
| |
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||||| || |||||||| |||| ||||||| ||||| | |||||| || |||||||||||||||||||| ||||| |||| ||||||||||||| |
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| T |
3070185 |
aatccaaaatcagaaattcttgcattgaagtaatcatcaaggagtatgttctgaggctttatgtcacaatggatgatcctagtgatgcactcttcatgta |
3070284 |
T |
|
| Q |
248 |
aatacac |
254 |
Q |
| |
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||||||| |
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|
| T |
3070285 |
aatacac |
3070291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 135 - 216
Target Start/End: Complemental strand, 21457649 - 21457568
Alignment:
| Q |
135 |
caacaatttagccaatccgaagtcagaaatctttgctgtgaagtactcatctatgagtatattttgaggctttatgtcacaa |
216 |
Q |
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| T |
21457649 |
caacaattttgctaatccaaagtcagaaattcttgcattgaagtaatcatcaatgggtatgttttgaggctttatgtcacaa |
21457568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 245
Target Start/End: Complemental strand, 47068776 - 47068727
Alignment:
| Q |
196 |
ttttgaggctttatgtcacaatgaatgatgggagtgtcacactcttcatg |
245 |
Q |
| |
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||||||||||||| ||| ||||||||||| |||| |||||||||||||| |
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| T |
47068776 |
ttttgaggctttaagtcgcaatgaatgattggagcatcacactcttcatg |
47068727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 245
Target Start/End: Original strand, 47075554 - 47075603
Alignment:
| Q |
196 |
ttttgaggctttatgtcacaatgaatgatgggagtgtcacactcttcatg |
245 |
Q |
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||||||||||||||||||||||||||||| || | ||||| |||||||| |
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| T |
47075554 |
ttttgaggctttatgtcacaatgaatgattggtgcctcacattcttcatg |
47075603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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