View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1162_high_5 (Length: 274)
Name: NF1162_high_5
Description: NF1162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1162_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 30 - 261
Target Start/End: Complemental strand, 6327693 - 6327462
Alignment:
| Q |
30 |
tgttgttgctattaaaattggaatccggagttcacgggaagagattaaaagaccaagacaaccaagctcattgatgaaaaccatatttagagatatattt |
129 |
Q |
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| T |
6327693 |
tgttgttgctattaaaattggaatctggagttcacgggaagagatcaaaagaccaagacaaccaaattcattgacgaaaaccatatttagagatatattt |
6327594 |
T |
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| Q |
130 |
gtgagtaattttgttatattgaagaactataatgacatcgtttgacatattcagagatttaaatgatgatttgagattaaacatagacacacaagacata |
229 |
Q |
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| T |
6327593 |
atgagtaattttgttatattgaagaactataatgacatcgtttgatacattcaaagatttaaatgatgatttgggtttaaacatagacacacaagacata |
6327494 |
T |
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| Q |
230 |
aataataataaaaattcaacccatgcatagta |
261 |
Q |
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| T |
6327493 |
aataataataaaaattcaacccatgcatagta |
6327462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 112 - 182
Target Start/End: Complemental strand, 6329557 - 6329491
Alignment:
| Q |
112 |
atatttagagatatatttgtgagtaattttgttatattgaagaactataatgacatcgtttgacatattca |
182 |
Q |
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| T |
6329557 |
atatttagagatatttttgt----aattttgttatattgaagaattataatgacatcgtttgacacattca |
6329491 |
T |
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