View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1162_low_1 (Length: 807)

Name: NF1162_low_1
Description: NF1162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1162_low_1
NF1162_low_1
[»] chr3 (52 HSPs)
chr3 (1-767)||(23467143-23467912)
chr3 (26-242)||(23400943-23401159)
chr3 (461-638)||(23427143-23427320)
chr3 (446-661)||(23400736-23400951)
chr3 (284-393)||(40845940-40846049)
chr3 (284-393)||(5391453-5391562)
chr3 (285-393)||(21853194-21853302)
chr3 (284-393)||(44994991-44995101)
chr3 (285-393)||(13856096-13856204)
chr3 (284-392)||(32352843-32352951)
chr3 (284-385)||(8950535-8950636)
chr3 (478-661)||(23452689-23452872)
chr3 (285-393)||(20382514-20382624)
chr3 (285-393)||(19649395-19649506)
chr3 (284-393)||(10839403-10839514)
chr3 (446-661)||(23470907-23471122)
chr3 (285-393)||(1781757-1781867)
chr3 (285-382)||(43347370-43347468)
chr3 (446-661)||(23438407-23438622)
chr3 (285-393)||(36539627-36539737)
chr3 (289-382)||(54546904-54546998)
chr3 (285-393)||(3178699-3178808)
chr3 (452-661)||(23350472-23350681)
chr3 (452-661)||(23461797-23462003)
chr3 (294-380)||(22845398-22845484)
chr3 (457-661)||(23403193-23403394)
chr3 (692-761)||(23427050-23427118)
chr3 (452-638)||(23382057-23382240)
chr3 (286-382)||(8926762-8926860)
chr3 (308-380)||(46685819-46685891)
chr3 (122-236)||(23462007-23462121)
chr3 (284-380)||(33103738-33103835)
chr3 (295-385)||(47889731-47889823)
chr3 (284-377)||(48206848-48206943)
chr3 (122-236)||(23382244-23382358)
chr3 (284-382)||(6280393-6280492)
chr3 (121-219)||(36001223-36001321)
chr3 (122-207)||(23350714-23350799)
chr3 (122-238)||(23471118-23471234)
chr3 (310-382)||(51336231-51336303)
chr3 (122-177)||(23438640-23438695)
chr3 (25-100)||(23446172-23446247)
chr3 (25-106)||(23497915-23497996)
chr3 (123-219)||(23403420-23403516)
chr3 (121-173)||(23446045-23446097)
chr3 (116-219)||(23477305-23477408)
chr3 (121-175)||(23434171-23434225)
chr3 (30-106)||(23477466-23477542)
chr3 (285-380)||(791812-791906)
chr3 (285-349)||(36826021-36826087)
chr3 (289-385)||(19644358-19644458)
chr3 (26-55)||(23403623-23403652)
[»] chr8 (18 HSPs)
chr8 (284-393)||(35806790-35806899)
chr8 (285-393)||(22324593-22324701)
chr8 (284-393)||(21525354-21525463)
chr8 (284-393)||(26021391-26021501)
chr8 (284-385)||(33934400-33934501)
chr8 (288-393)||(42013872-42013977)
chr8 (284-393)||(42072424-42072533)
chr8 (306-392)||(24065291-24065377)
chr8 (284-384)||(19334778-19334879)
chr8 (306-382)||(21488084-21488160)
chr8 (288-393)||(16818996-16819105)
chr8 (285-380)||(10112042-10112139)
chr8 (340-393)||(16523158-16523211)
chr8 (306-382)||(43282885-43282962)
chr8 (284-382)||(2271196-2271289)
chr8 (306-374)||(34697431-34697500)
chr8 (342-393)||(16591398-16591449)
chr8 (413-446)||(42014019-42014052)
[»] chr7 (18 HSPs)
chr7 (284-393)||(44164766-44164875)
chr7 (285-393)||(34707113-34707221)
chr7 (284-393)||(10576669-10576778)
chr7 (284-381)||(24320474-24320571)
chr7 (284-385)||(29555970-29556071)
chr7 (284-385)||(32876561-32876662)
chr7 (296-393)||(34259526-34259623)
chr7 (284-393)||(29238166-29238275)
chr7 (303-393)||(29981136-29981226)
chr7 (285-393)||(33057680-33057789)
chr7 (285-385)||(19334591-19334693)
chr7 (285-385)||(17303145-17303248)
chr7 (285-382)||(10334173-10334272)
chr7 (311-382)||(9770682-9770753)
chr7 (285-391)||(26284404-26284510)
chr7 (332-382)||(15017817-15017867)
chr7 (403-445)||(24320400-24320442)
chr7 (285-380)||(41853128-41853226)
[»] chr6 (15 HSPs)
chr6 (285-393)||(9231877-9231985)
chr6 (252-393)||(14309821-14309962)
chr6 (284-393)||(24694674-24694783)
chr6 (284-393)||(13627536-13627645)
chr6 (314-393)||(1727956-1728035)
chr6 (284-393)||(27863694-27863804)
chr6 (306-382)||(34103703-34103779)
chr6 (285-382)||(28750684-28750783)
chr6 (290-382)||(13103152-13103246)
chr6 (284-337)||(11084606-11084659)
chr6 (306-382)||(11212689-11212765)
chr6 (285-382)||(11279536-11279634)
chr6 (344-382)||(24497608-24497646)
chr6 (340-380)||(8412717-8412757)
chr6 (288-349)||(24500767-24500830)
[»] chr5 (29 HSPs)
chr5 (284-393)||(23218481-23218590)
chr5 (284-393)||(37169056-37169165)
chr5 (285-393)||(38397595-38397703)
chr5 (284-393)||(6257433-6257542)
chr5 (242-385)||(39862518-39862660)
chr5 (285-393)||(16618593-16618701)
chr5 (288-392)||(15631613-15631718)
chr5 (285-393)||(10081140-10081250)
chr5 (285-393)||(8456986-8457096)
chr5 (284-382)||(36769108-36769207)
chr5 (306-391)||(9738008-9738094)
chr5 (285-393)||(11856290-11856400)
chr5 (285-393)||(25560350-25560460)
chr5 (288-382)||(614426-614522)
chr5 (306-382)||(6174762-6174840)
chr5 (285-382)||(42119617-42119716)
chr5 (309-382)||(33271304-33271377)
chr5 (284-382)||(27916133-27916234)
chr5 (308-393)||(29491437-29491521)
chr5 (306-384)||(29790251-29790328)
chr5 (314-379)||(10115185-10115251)
chr5 (306-374)||(3341162-3341230)
chr5 (332-380)||(19322058-19322106)
chr5 (413-445)||(23218632-23218664)
chr5 (307-355)||(33188403-33188451)
chr5 (311-393)||(10052523-10052606)
chr5 (413-447)||(16618517-16618551)
chr5 (285-358)||(22903252-22903329)
chr5 (413-446)||(37168981-37169014)
[»] chr4 (30 HSPs)
chr4 (284-393)||(1535767-1535876)
chr4 (284-393)||(49284353-49284462)
chr4 (284-385)||(25954746-25954847)
chr4 (288-385)||(34240993-34241090)
chr4 (284-393)||(52632514-52632623)
chr4 (284-393)||(37801287-37801396)
chr4 (288-393)||(46583564-46583669)
chr4 (284-393)||(36012208-36012317)
chr4 (284-385)||(35018932-35019033)
chr4 (285-385)||(17888581-17888683)
chr4 (285-351)||(16338309-16338375)
chr4 (285-393)||(31377385-31377495)
chr4 (285-381)||(322584-322682)
chr4 (311-385)||(16338244-16338318)
chr4 (285-393)||(54090176-54090285)
chr4 (306-393)||(20818584-20818672)
chr4 (284-393)||(12792254-12792365)
chr4 (290-382)||(9742567-9742661)
chr4 (315-393)||(10094416-10094495)
chr4 (285-393)||(11054448-11054561)
chr4 (284-380)||(50328790-50328888)
chr4 (285-392)||(35322728-35322837)
chr4 (284-382)||(46473988-46474088)
chr4 (332-393)||(47084056-47084117)
chr4 (121-172)||(12898192-12898243)
chr4 (403-446)||(34241118-34241161)
chr4 (306-382)||(19124772-19124849)
chr4 (332-380)||(5780790-5780838)
chr4 (403-442)||(25954875-25954914)
chr4 (413-446)||(16338161-16338194)
[»] chr2 (20 HSPs)
chr2 (284-393)||(14186461-14186570)
chr2 (284-393)||(14942067-14942176)
chr2 (284-393)||(42769781-42769890)
chr2 (285-393)||(29846439-29846547)
chr2 (284-385)||(19181544-19181645)
chr2 (284-393)||(40277311-40277420)
chr2 (284-392)||(1387312-1387421)
chr2 (284-380)||(3597903-3597999)
chr2 (285-393)||(6318481-6318592)
chr2 (285-393)||(3956567-3956677)
chr2 (284-393)||(41674729-41674841)
chr2 (309-380)||(43139766-43139839)
chr2 (284-382)||(14539738-14539838)
chr2 (284-392)||(33009666-33009777)
chr2 (285-382)||(40780050-40780150)
chr2 (285-382)||(28321737-28321836)
chr2 (285-380)||(23685406-23685503)
chr2 (306-393)||(2888058-2888146)
chr2 (309-380)||(25665244-25665316)
chr2 (285-367)||(32486239-32486323)
[»] chr1 (26 HSPs)
chr1 (284-393)||(3346782-3346891)
chr1 (284-393)||(7742802-7742911)
chr1 (284-393)||(49902464-49902573)
chr1 (284-393)||(29149571-29149680)
chr1 (284-393)||(48392429-48392538)
chr1 (288-393)||(5974988-5975093)
chr1 (284-393)||(42517317-42517430)
chr1 (284-385)||(10156047-10156148)
chr1 (284-393)||(47022698-47022807)
chr1 (285-385)||(23908282-23908382)
chr1 (288-385)||(38859849-38859948)
chr1 (285-382)||(10907682-10907781)
chr1 (313-381)||(5558334-5558402)
chr1 (284-384)||(26835332-26835434)
chr1 (306-393)||(30745361-30745449)
chr1 (306-393)||(30766812-30766900)
chr1 (285-385)||(42456566-42456669)
chr1 (306-374)||(30252787-30252856)
chr1 (345-393)||(37189697-37189745)
chr1 (284-374)||(44107430-44107522)
chr1 (306-382)||(45968685-45968761)
chr1 (285-382)||(14796871-14796970)
chr1 (285-382)||(14805745-14805844)
chr1 (306-380)||(13131914-13131988)
chr1 (310-382)||(26511667-26511739)
chr1 (307-349)||(8430508-8430551)
[»] scaffold0201 (2 HSPs)
scaffold0201 (452-661)||(9969-10175)
scaffold0201 (122-219)||(10196-10293)
[»] scaffold0079 (3 HSPs)
scaffold0079 (285-351)||(54485-54551)
scaffold0079 (311-385)||(54542-54616)
scaffold0079 (413-446)||(54666-54699)
[»] scaffold0045 (1 HSPs)
scaffold0045 (306-393)||(34475-34563)
[»] scaffold0086 (1 HSPs)
scaffold0086 (332-382)||(20865-20915)
[»] scaffold0016 (1 HSPs)
scaffold0016 (335-380)||(85547-85592)


Alignment Details
Target: chr3 (Bit Score: 658; Significance: 0; HSPs: 52)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 658; E-Value: 0
Query Start/End: Original strand, 1 - 767
Target Start/End: Complemental strand, 23467912 - 23467143
Alignment:
Q  1 ctctaacagagcttccaccatccctgccgttaattgcacttatctggacacatactccattcaaccgtcattttttaataacatgttacaaaccttctct 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23467912 ctctaacagagcttccaccatccctgccgttaattgcagttatctggacacatactccattcaaccgtcattttttaataacatgttacaaaccttctct 23467813  T
Q  101 gaagactccattgcatgcatgtttgattttcagacaatagaggcttcaataattattcctcctattccaaaatctgatttgtgcagttttatattttgca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  23467812 gaagactccattgcatgcatgtttgattttcagacaatagaggcttcaataattattcctcctattccaaaatctgatttgtgcagttttatattttcca 23467713  T
Q  201 tcattctttctgtgggctttaatgtttaccaccatgccgttc---ggcgaagccaggaatattgtaaagcctgggcgnnnnnnnnntttgcaacacattt 297  Q
    |||||||||||| |||||||||||||||||||||||||||||   |||| |||||||||||||||||||||||||||         ||||||||||||||    
T  23467712 tcattctttctgagggctttaatgtttaccaccatgccgttcagtggcggagccaggaatattgtaaagcctgggcggaaaatttttttgcaacacattt 23467613  T
Q  298 atagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcatagagatttacnnnn 397  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||        
T  23467612 atagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcatagggatttacacaa 23467513  T
Q  398 nnnnnttggcccggagcccgggatcgccgggccttagaaccgcccctgatgccgttcactgtattatctttgaaaacggaaaagaagccgacatacgttg 497  Q
         ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23467512 aaaatttggcccggagccgggggtcgccgggccttagaaccgcccctgatgccgttcactgtattatctttgaaaacggaaaagaagccgacatacgttg 23467413  T
Q  498 tattagtgacagttatcttgggacattcatttctgattatgtactggtatgctggcatgttcacaacagacaagatagtgaaacttatgatttttgcaac 597  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  23467412 tattagtgacagttatcttgggacattcatttctgattatgtactggtatgctggcatgttcacaacagacaagatagtgaaatttatgatttttgcaac 23467313  T
Q  598 ttatcatttcaatttctacttcaaggtcacaaggaacaattgtggtgttcaacagaggggataagtgtgttgtatctttaggaatttaattaatcaatga 697  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  23467312 ttatcatttcaatttctacttcaaggtcacaaggaacaattgtggtgttcaacagaggggataagtgtgttgtatctttaggaatgtaattaatcaatga 23467213  T
Q  698 aaacacatgttttaattttgtagctagtttcttttcatcttctccttcttagtcttagagcccctatgct 767  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  23467212 aaacatatgttttaattttgtagctagtttcttttcatcttctccttcttagtcttagagccccaatgct 23467143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 26 - 242
Target Start/End: Complemental strand, 23401159 - 23400943
Alignment:
Q  26 gccgttaattgcacttatctggacacatactccattcaaccgtcattttttaataacatgttacaaaccttctctgaagactccattgcatgcatgtttg 125  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  23401159 gccgttaattgcacttatatggacacatactccattcaaccgtcattttttaataacatgttacaaaccttctctgaagactccattgcatgcatctttg 23401060  T
Q  126 attttcagacaatagaggcttcaataattattcctcctattccaaaatctgatttgtgcagttttatattttgcatcattctttctgtgggctttaatgt 225  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||    
T  23401059 attttcagacaatagaggcttcaataattattcctcctattccaaaatctgattggtgcagttttatattttgcatcattctttctgagggctttaatgt 23400960  T
Q  226 ttaccaccatgccgttc 242  Q
    |||||||||||||||||    
T  23400959 ttaccaccatgccgttc 23400943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 154; E-Value: 3e-81
Query Start/End: Original strand, 461 - 638
Target Start/End: Complemental strand, 23427320 - 23427143
Alignment:
Q  461 ttatctttgaaaacggaaaagaagccgacatacgttgtattagtgacagttatcttgggacattcatttctgattatgtactggtatgctggcatgttca 560  Q
    |||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  23427320 ttatttttgaaaacggaaaagaagccgacagacgttgtagtagtgacagttatcttgggacattcatttctgatcatgtactggtatgctggcatgttca 23427221  T
Q  561 caacagacaagatagtgaaacttatgatttttgcaacttatcatttcaatttctacttcaaggtcacaaggaacaatt 638  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23427220 caacagacaatatagtgaaagttatgatttttgcaacttatcatttcaatttctacttcaaggtcacaaggaacaatt 23427143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 140; E-Value: 7e-73
Query Start/End: Original strand, 446 - 661
Target Start/End: Complemental strand, 23400951 - 23400736
Alignment:
Q  446 atgccgttcactgtattatctttgaaaacggaaaagaagccgacatacgttgtattagtgacagttatcttgggacattcatttctgattatgtactggt 545  Q
    |||||||||||||||||||||||||||| ||  ||||||| |||| |||| |||||||||||||||||||||||| ||||||| ||||| ||||| ||||    
T  23400951 atgccgttcactgtattatctttgaaaatggctaagaagctgacagacgtcgtattagtgacagttatcttgggatattcattactgatcatgtattggt 23400852  T
Q  546 atgctggcatgttcacaacagacaagatagtgaaacttatgatttttgcaacttatcatttcaatttctacttcaaggtcacaaggaacaattgtggtgt 645  Q
    ||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||| ||||     
T  23400851 atgctagcatgttcacaacagacaagatagtggaagttatgatttttgcaacttatcatttcagtttctacttcaaggtcacaagaaactattgcggtgg 23400752  T
Q  646 tcaacagaggggataa 661  Q
    ||||| ||||||||||    
T  23400751 tcaacggaggggataa 23400736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 284 - 393
Target Start/End: Complemental strand, 40846049 - 40845940
Alignment:
Q  284 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 383  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40846049 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 40845950  T
Q  384 agagatttac 393  Q
    || |||||||    
T  40845949 agggatttac 40845940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 284 - 393
Target Start/End: Original strand, 5391453 - 5391562
Alignment:
Q  284 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 383  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  5391453 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgtccaatttataggggtttatataagaaattcat 5391552  T
Q  384 agagatttac 393  Q
    || |||||||    
T  5391553 agggatttac 5391562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 285 - 393
Target Start/End: Original strand, 21853194 - 21853302
Alignment:
Q  285 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcata 384  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  21853194 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggttttatataagaaattcata 21853293  T
Q  385 gagatttac 393  Q
    | |||||||    
T  21853294 gggatttac 21853302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 284 - 393
Target Start/End: Complemental strand, 44995101 - 44994991
Alignment:
Q  284 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttat-aggggtttatataagaaattca 382  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  44995101 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataaggggtttatataagaaattca 44995002  T
Q  383 tagagatttac 393  Q
    ||| |||||||    
T  44995001 tagggatttac 44994991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 285 - 393
Target Start/End: Original strand, 13856096 - 13856204
Alignment:
Q  285 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcata 384  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  13856096 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgtccaatttatagggatttatataagaaattcata 13856195  T
Q  385 gagatttac 393  Q
    | |||||||    
T  13856196 gggatttac 13856204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 284 - 392
Target Start/End: Original strand, 32352843 - 32352951
Alignment:
Q  284 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 383  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  32352843 tttgcaacacatttatagggcgtacataagaaattgtaagcaaataataaaaaatgtaaagaaattgcctaatttataggggtttatataagaaattcat 32352942  T
Q  384 agagattta 392  Q
    || ||||||    
T  32352943 agggattta 32352951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 284 - 385
Target Start/End: Complemental strand, 8950636 - 8950535
Alignment:
Q  284 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 383  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  8950636 tttgcaacatatttatagggcgtacataagaaatttcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcat 8950537  T
Q  384 ag 385  Q
    ||    
T  8950536 ag 8950535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 478 - 661
Target Start/End: Complemental strand, 23452872 - 23452689
Alignment:
Q  478 aaagaagccgacatacgttgtattagtgacagttatcttgggacattcatttctgattatgtactggtatgctggcatgttcacaacagacaagatagtg 577  Q
    ||||||| ||||| | || ||||||||  ||  |||||||||||||| ||||| ||| ||||| || |||||||| ||| | |||||| |||||| | ||    
T  23452872 aaagaagtcgacagatgtcgtattagttgcaaatatcttgggacattaatttcagatcatgtattgatatgctggaatggttacaacaaacaagaaactg 23452773  T
Q  578 aaacttatgatttttgcaacttatcatttcaatttctacttcaaggtcacaaggaacaattgtggtgttcaacagaggggataa 661  Q
     || | |||| ||||||||| |||||||||| || |||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  23452772 gaagtcatgacttttgcaacctatcatttcagttcctacttcaaggtcaaaaggaacaattgtggtggtcaacagaggggataa 23452689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 285 - 393
Target Start/End: Original strand, 20382514 - 20382624
Alignment:
Q  285 ttgcaacacatttatagg-gcgtacataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgcccaatttataggggtttatataagaaattca 382  Q
    ||||||| |||||||||| |  |||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||    
T  20382514 ttgcaacgcatttataggagtttacataagaaattgcaagcaaataataaaaaaatctaaagaaatttcccaatttataggggtttatataagaaattca 20382613  T
Q  383 tagagatttac 393  Q
    ||| |||||||    
T  20382614 tagggatttac 20382624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 285 - 393
Target Start/End: Complemental strand, 19649506 - 19649395
Alignment:
Q  285 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataat--aaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattc 381  Q
    |||||||||||||||||||  | |||||||||||||||||||||||||  ||||||| ||||||||||| |||||||||| |||||||||||||||||||    
T  19649506 ttgcaacacatttatagggaattacataagaaattgcaagcaaataatccaaaaaatctaaagaaattgtccaatttataagggtttatataagaaattc 19649407  T
Q  382 atagagatttac 393  Q
    |||| |||||||    
T  19649406 atagcgatttac 19649395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 284 - 393
Target Start/End: Complemental strand, 10839514 - 10839403
Alignment:
Q  284 tttgcaacacatttatagg-gcgtacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattc 381  Q
    |||||||||||| |||||| |  |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  10839514 tttgcaacacatgtataggtgtttacataagaaattgcaagcaaataatcaaaaaatctaaagaaattgcccaatttatagaggtttatataagaaattc 10839415  T
Q  382 atagagatttac 393  Q
    | ||| ||||||    
T  10839414 agagaaatttac 10839403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 446 - 661
Target Start/End: Complemental strand, 23471122 - 23470907
Alignment:
Q  446 atgccgttcactgtattatctttgaaaacggaaaagaagccgacatacgttgtattagtgacagttatcttgggacattcatttctgattatgtactggt 545  Q
    ||||| |||| |||||||| ||||||  ||||||||||| | ||| |||| | |||||| ||| |||| |||||||||| ||||| ||| ||| | || |    
T  23471122 atgcccttcattgtattatttttgaacgcggaaaagaagtcaacagacgtcgcattagtcacaattattttgggacattaatttcagatcatgcattgat 23471023  T
Q  546 atgctggcatgttcacaacagacaagatagtgaaacttatgatttttgcaacttatcatttcaatttctacttcaaggtcacaaggaacaattgtggtgt 645  Q
    ||| ||||||| | ||||||||||||| | || || ||||||| ||||||||||||||||||||||  |||||||||||| ||| ||| ||||  ||||     
T  23471022 atgttggcatggttacaacagacaagaaaatggaagttatgatatttgcaacttatcatttcaattcatacttcaaggtcccaatgaagaattacggtgg 23470923  T
Q  646 tcaacagaggggataa 661  Q
    ||||  ||||||||||    
T  23470922 tcaaaggaggggataa 23470907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 285 - 393
Target Start/End: Original strand, 1781757 - 1781867
Alignment:
Q  285 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattca 382  Q
    |||||||||||||||||||  | ||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||    
T  1781757 ttgcaacacatttataggggtttacatacgaaattgcaagcaaataatcaaaaaatctaaagaaattgcccaatttattggggtttatataagaaattca 1781856  T
Q  383 tagagatttac 393  Q
     || |||||||    
T  1781857 gagggatttac 1781867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 285 - 382
Target Start/End: Complemental strand, 43347468 - 43347370
Alignment:
Q  285 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattca 382  Q
    |||||||| | ||||||||  |||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  43347468 ttgcaacataattatagggtttacataagaaattgcaagcaaataatcaaaaaatctaaagaaattgcccaatttgtaggggtttatataagaaattca 43347370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 446 - 661
Target Start/End: Complemental strand, 23438622 - 23438407
Alignment:
Q  446 atgccgttcactgtattatctttgaaaacggaaaagaagccgacatacgttgtattagtgacagttatcttgggacattcatttctgattatgtactggt 545  Q
    ||||| |||| ||||| ||||| |||  ||||||||||| ||||| |  | |||||||| ||| |||||| |||||||| ||||| ||| ||||| || |    
T  23438622 atgcccttcattgtatcatcttggaatgcggaaaagaagtcgacagatctcgtattagtcacaattatctcgggacattaatttcagatcatgtattgat 23438523  T
Q  546 atgctggcatgttcacaacagacaagatagtgaaacttatgatttttgcaacttatcatttcaatttctacttcaaggtcacaaggaacaattgtggtgt 645  Q
    ||||||||||| | ||||||||||||| | || || | ||||| ||| ||||||||||||||||||  ||| ||||| || ||| ||| ||||||||||     
T  23438522 atgctggcatggttacaacagacaagaaaatggaagtaatgatatttacaacttatcatttcaattcatacatcaagatcccaatgaagaattgtggtgg 23438423  T
Q  646 tcaacagaggggataa 661  Q
    ||||  ||||||||||    
T  23438422 tcaaaggaggggataa 23438407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 285 - 393
Target Start/End: Original strand, 36539627 - 36539737
Alignment:
Q  285 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattca 382  Q
    |||||||||||||||||||  | ||||| |||||||||| |||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||| |    
T  36539627 ttgcaacacatttataggggtttacataggaaattgcaaacaaataatcaaaaaatttaaagaaattgcccaatttataggggattatataagaaattta 36539726  T
Q  383 tagagatttac 393  Q
    ||| |||||||    
T  36539727 tagggatttac 36539737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 289 - 382
Target Start/End: Original strand, 54546904 - 54546998
Alignment:
Q  289 aacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattca 382  Q
    |||||||||||||||  | ||||||||||||| ||||||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  54546904 aacacatttatagggatttacataagaaattgtaagcaaataatcaaaaatctaaagaaattgtccaatttataggggtttatataagaaattca 54546998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 285 - 393
Target Start/End: Original strand, 3178699 - 3178808
Alignment:
Q  285 ttgcaacacatttatagg-gcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 383  Q
    |||||||| ||||||||| |  |||||| |||||||||||||||||| ||||||  ||||||||||||||||||||||| | ||||||||||||||||||    
T  3178699 ttgcaacatatttataggagtttacatacgaaattgcaagcaaataaaaaaaaaactaaagaaattgcccaatttatagagatttatataagaaattcat 3178798  T
Q  384 agagatttac 393  Q
    || |||||||    
T  3178799 agggatttac 3178808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 452 - 661
Target Start/End: Complemental strand, 23350681 - 23350472
Alignment:
Q  452 ttcactgtattatctttgaaaacggaaaagaagccgacatacgttgtattagtgacagttatcttgggacattcatttctgattatgtactggtatgctg 551  Q
    |||| ||| ||||||||||| | || ||||||| ||||| | || ||||||||  || |||||||||| |||| ||||  ||| | ||| || |||| ||    
T  23350681 ttcattgtgttatctttgaacatggcaaagaagtcgacagatgtcgtattagttgcaattatcttggggcattaattttagatcacgtattgatatgttg 23350582  T
Q  552 gcatgttcacaacagacaagatagtgaaacttatgatttttgcaacttatcatttcaatttctacttcaaggtcacaaggaacaattgtggtgttcaaca 651  Q
    ||||  | ||| ||  ||||| |||| || |||||| ||||||||| |||||||||||||| |||||||||||||||||||| |||||||||| || ||     
T  23350581 gcatcgttacagcattcaagaaagtggaagttatgacttttgcaacctatcatttcaatttatacttcaaggtcacaaggaaaaattgtggtggtcgact 23350482  T
Q  652 gaggggataa 661  Q
    ||||||||||    
T  23350481 gaggggataa 23350472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 452 - 661
Target Start/End: Complemental strand, 23462003 - 23461797
Alignment:
Q  452 ttcactgtattatctttgaaaacggaaaagaagccgacatacgttgtattagtgacagttatcttgggacattcatttctgattatgtactggtatgctg 551  Q
    |||| |||||||||||||||  ||||||||||| ||||| |||| | |||||   || |||||| |||||||| ||||| ||| ||||| || |  | ||    
T  23462003 ttcattgtattatctttgaatgcggaaaagaagtcgacagacgtcgcattagattcaattatctcgggacattaatttcagatcatgtattgatgcgttg 23461904  T
Q  552 gcatgttcacaacagacaagatagtgaaacttatgatttttgcaacttatcatttcaatttctacttcaaggtcacaaggaacaattgtggtgttcaaca 651  Q
    ||||| | |||||| |||||| |||| || |||||||| |   |||||||||||| ||||  |||||||||||| ||| ||| |||||||||| ||||||    
T  23461903 gcatggttacaacatacaagaaagtggaagttatgattgt---aacttatcatttaaattcatacttcaaggtcccaatgaagaattgtggtggtcaaca 23461807  T
Q  652 gaggggataa 661  Q
    ||||||||||    
T  23461806 gaggggataa 23461797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 294 - 380
Target Start/End: Complemental strand, 22845484 - 22845398
Alignment:
Q  294 atttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaatt 380  Q
    ||||||||||  || |||| ||||||||||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||    
T  22845484 atttatagggtttatataaaaaattgcaagcaaataataaaaaatctaaagaaattgtcaaatttataggggtttatataagaaatt 22845398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 457 - 661
Target Start/End: Complemental strand, 23403394 - 23403193
Alignment:
Q  457 tgtattatctttgaaaacggaaaagaagccgacatacgttgtattagtgacagttatcttgggacattcatttctgattatgtactggtatgctggcatg 556  Q
    ||||| |||||||||   |||||||||| ||||| |||| | ||||||  || |||||| |||||||| ||||| ||| ||||| || | || |||||||    
T  23403394 tgtatcatctttgaatgtggaaaagaagtcgacagacgtcgcattagtctcaattatctcgggacattaatttcagatcatgtattgatgtgttggcatg 23403295  T
Q  557 ttcacaacagacaagatagtgaaacttatgatttttgcaacttatcatttcaatttctacttcaaggtcacaaggaacaattgtggtgttcaacagaggg 656  Q
     | |||||| |||||| |||| || |||||||| |   |||||||||||||||||  |||||||||||| ||| ||| || ||||||| |||||||||||    
T  23403294 gttacaacatacaagaaagtggaagttatgattgt---aacttatcatttcaattcatacttcaaggtcccaatgaagaactgtggtggtcaacagaggg 23403198  T
Q  657 gataa 661  Q
    |||||    
T  23403197 gataa 23403193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 692 - 761
Target Start/End: Complemental strand, 23427118 - 23427050
Alignment:
Q  692 caatgaaaacacatgttttaattttgtagctagtttcttttcatcttctccttcttagtcttagagcccc 761  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||    
T  23427118 caatgaaaacacatgttttaattttgtagctag-ttcctttcatcttctccttcttagtcttagagcccc 23427050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 452 - 638
Target Start/End: Complemental strand, 23382240 - 23382057
Alignment:
Q  452 ttcactgtattatctttgaaaacggaaaagaagccgacatacgttgtattagtgacagttatcttgggacattcatttctgattatgtactggtatgctg 551  Q
    |||| |||||||||||||||  ||||||||||| ||||| |||| | ||||||  || |||||| |||||||| ||||| ||| ||||| || |||| ||    
T  23382240 ttcattgtattatctttgaatgcggaaaagaagtcgacagacgtcgcattagtctcaattatctcgggacattaatttcagatcatgtattgatatggtg 23382141  T
Q  552 gcatgttcacaacagacaagatagtgaaacttatgatttttgcaacttatcatttcaatttctacttcaaggtcacaaggaacaatt 638  Q
    ||||| | |||||| |||||| |||| || ||||||   ||| |||||||||||||||||  |||||||||||| ||| ||| ||||    
T  23382140 gcatggttacaacatacaagaaagtggaagttatga---ttgtaacttatcatttcaattcatacttcaaggtcccaatgaagaatt 23382057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 286 - 382
Target Start/End: Original strand, 8926762 - 8926860
Alignment:
Q  286 tgcaacacatttatagggcgta-cataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattca 382  Q
    ||||||||||||||| ||  || |||||||||||||||||||||||| ||||||| || |||||||||| ||||||||||||||||||| |||||||||    
T  8926762 tgcaacacatttataagggttaacataagaaattgcaagcaaataatcaaaaaatctacagaaattgccaaatttataggggtttatatcagaaattca 8926860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 308 - 380
Target Start/End: Complemental strand, 46685891 - 46685819
Alignment:
Q  308 cataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaatt 380  Q
    ||||||||||||||| ||||||||||||||| ||||||||||| | |||||||||| ||||||||||||||||    
T  46685891 cataagaaattgcaaacaaataataaaaaatataaagaaattgtcaaatttataggagtttatataagaaatt 46685819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 122 - 236
Target Start/End: Complemental strand, 23462121 - 23462007
Alignment:
Q  122 tttgattttcagacaatagaggcttcaataattattcctcctattccaaaatctgatttgtgcagttttatattttgcatcattctttctgtgggcttta 221  Q
    |||||||||||||||||  |||||||||||| ||||| ||||||| | |||||||| |||||  |||| |||||||||||| || |||||| |||||| |    
T  23462121 tttgattttcagacaatcaaggcttcaataactattcttcctattgctaaatctgacttgtgtggtttcatattttgcatccttttttctgagggcttca 23462022  T
Q  222 atgtttaccaccatg 236  Q
     |||| |||||||||    
T  23462021 ctgttaaccaccatg 23462007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 284 - 380
Target Start/End: Original strand, 33103738 - 33103835
Alignment:
Q  284 tttgcaacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaatt 380  Q
    ||||||||||||||||| ||  | |||||||||||| ||||||||||||||||||| |||| |||||  |||||||||||||  ||||||||||||||    
T  33103738 tttgcaacacatttataaggatttacataagaaattacaagcaaataataaaaaatttaaataaattatccaatttatagggacttatataagaaatt 33103835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 295 - 385
Target Start/End: Original strand, 47889731 - 47889823
Alignment:
Q  295 tttatagggcgtacataagaaattg-caagcaaataataaaaaa-tgtaaagaaattgcccaatttataggggtttatataagaaattcatag 385  Q
    |||||||||  ||||| |||||||| |||| ||||||||||||| | ||||||||||||||||||||||||  ||||||||||||||||||||    
T  47889731 tttatagggtttacattagaaattgtcaagtaaataataaaaaaatttaaagaaattgcccaatttataggaatttatataagaaattcatag 47889823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 284 - 377
Target Start/End: Original strand, 48206848 - 48206943
Alignment:
Q  284 tttgcaacacatttatagg-gcgtacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataagaa 377  Q
    ||||||||||||||||| | |  |||||||||||||||||| ||||||| ||||||| |||| |||||| | ||||||||||||||||||||||||    
T  48206848 tttgcaacacatttataagtgtttacataagaaattgcaagtaaataatcaaaaaatctaaaaaaattgtcaaatttataggggtttatataagaa 48206943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 122 - 236
Target Start/End: Complemental strand, 23382358 - 23382244
Alignment:
Q  122 tttgattttcagacaatagaggcttcaataattattcctcctattccaaaatctgatttgtgcagttttatattttgcatcattctttctgtgggcttta 221  Q
    |||||||||||||||||  |||||||||||| ||||| ||||||| | |||||||| |||||  |||| |||||||||||| || |||||| |||||| |    
T  23382358 tttgattttcagacaatcaaggcttcaataagtattcttcctattgctaaatctgacttgtgtggtttcatattttgcatccttttttctgagggcttca 23382259  T
Q  222 atgtttaccaccatg 236  Q
     |||| || ||||||    
T  23382258 ctgttaacaaccatg 23382244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 284 - 382
Target Start/End: Complemental strand, 6280492 - 6280393
Alignment:
Q  284 tttgcaacacatttatag-ggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattca 382  Q
    |||||||||||||||||  ||  ||||||| |||| |||||||||| || |||||| |||| |||||| | ||||||||| |||||||||||||||||||    
T  6280492 tttgcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattca 6280393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 121 - 219
Target Start/End: Complemental strand, 36001321 - 36001223
Alignment:
Q  121 gtttgattttcagacaatagaggcttcaataattattcctcctattccaaaatctgatttgtgcagttttatattttgcatcattctttctgtgggctt 219  Q
    |||| |||||||  ||| |||||| || ||| |||||||||||||||||||||||||||||||  |||| || |||||||||||| | |||| ||||||    
T  36001321 gttttattttcaatcaacagaggcctcgatagttattcctcctattccaaaatctgatttgtgttgtttaattttttgcatcattttctctgagggctt 36001223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 122 - 207
Target Start/End: Complemental strand, 23350799 - 23350714
Alignment:
Q  122 tttgattttcagacaatagaggcttcaataattattcctcctattccaaaatctgatttgtgcagttttatattttgcatcattct 207  Q
    ||||||||| ||||| ||||||||||||||| ||||||||| |||||||||||| | |||||  |||| ||||| |||||| ||||    
T  23350799 tttgattttaagacagtagaggcttcaataagtattcctccaattccaaaatcttacttgtgtggtttcatattctgcatcgttct 23350714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 122 - 238
Target Start/End: Complemental strand, 23471234 - 23471118
Alignment:
Q  122 tttgattttcagacaatagaggcttcaataattattcctcctattccaaaatctgatttgtgcagttttatattttgcatcattctttctgtgggcttta 221  Q
    ||||||||||||||||| ||||||||||||| ||||| |||||||  ||||||||  || ||  |||| |||||| ||||| || |||||| |||||| |    
T  23471234 tttgattttcagacaatcgaggcttcaataactattcttcctattaaaaaatctgtcttatgtggtttcatatttcgcatccttttttctgagggcttca 23471135  T
Q  222 atgtttaccaccatgcc 238  Q
     | || |||||||||||    
T  23471134 ctattaaccaccatgcc 23471118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 310 - 382
Target Start/End: Original strand, 51336231 - 51336303
Alignment:
Q  310 taagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattca 382  Q
    |||||||||||||| |||||||||||||| ||||||||||| | ||||||||  | ||||||||| |||||||    
T  51336231 taagaaattgcaagtaaataataaaaaatttaaagaaattgtcaaatttataaagatttatataaaaaattca 51336303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 122 - 177
Target Start/End: Complemental strand, 23438695 - 23438640
Alignment:
Q  122 tttgattttcagacaatagaggcttcaataattattcctcctattccaaaatctga 177  Q
    ||||||||||||||||  ||||||||||||| ||||| ||||||||||||||||||    
T  23438695 tttgattttcagacaactgaggcttcaataactattcttcctattccaaaatctga 23438640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 25 - 100
Target Start/End: Complemental strand, 23446247 - 23446172
Alignment:
Q  25 tgccgttaattgcacttatctggacacatactccattcaaccgtcattttttaataacatgttacaaaccttctct 100  Q
    |||| ||||||||||||||||||||||| |||||| ||||| ||||||| || | |||||| |||||| |||||||    
T  23446247 tgccattaattgcacttatctggacacagactccactcaacggtcatttcttgagaacatggtacaaatcttctct 23446172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 25 - 106
Target Start/End: Complemental strand, 23497996 - 23497915
Alignment:
Q  25 tgccgttaattgcacttatctggacacatactccattcaaccgtcattttttaataacatgttacaaaccttctctgaagac 106  Q
    |||| ||||||||||||||||||||||| |||||| ||||| ||||||| || | |||||  |||||| ||||||| |||||    
T  23497996 tgccattaattgcacttatctggacacagactccactcaacggtcatttcttgagaacatagtacaaatcttctctaaagac 23497915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 219
Target Start/End: Complemental strand, 23403516 - 23403420
Alignment:
Q  123 ttgattttcagacaatagaggcttcaataattattcctcctattccaaaatctgatttgtgcagttttatattttgcatcattctttctgtgggctt 219  Q
    ||||||| |||||||| ||||||||||||| ||||| ||||||| | |||||||  ||| |  |||| |||||||||||| || |||||| ||||||    
T  23403516 ttgatttgcagacaatcgaggcttcaataactattcttcctattactaaatctgtcttgcgtggtttcatattttgcatccttttttctgagggctt 23403420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 173
Target Start/End: Complemental strand, 23446097 - 23446045
Alignment:
Q  121 gtttgattttcagacaatagaggcttcaataattattcctcctattccaaaat 173  Q
    |||||||||||| |||||| ||||||||||||  |||||||||||||||||||    
T  23446097 gtttgattttcaaacaataaaggcttcaataaccattcctcctattccaaaat 23446045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 116 - 219
Target Start/End: Complemental strand, 23477408 - 23477305
Alignment:
Q  116 tgcatgtttgattttcagacaatagaggcttcaataattattcctcctattccaaaatctgatttgtgcagttttatattttgcatcattctttctgtgg 215  Q
    |||| |||||||||||| |||||  ||||||||||||  ||||||||||||||||||| | |  |||   |||| ||||| |||| ||||||||||| ||    
T  23477408 tgcaagtttgattttcaaacaatgaaggcttcaataaccattcctcctattccaaaatataacctgtctggtttcatattctgcaccattctttctgagg 23477309  T
Q  216 gctt 219  Q
    ||||    
T  23477308 gctt 23477305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 121 - 175
Target Start/End: Complemental strand, 23434225 - 23434171
Alignment:
Q  121 gtttgattttcagacaatagaggcttcaataattattcctcctattccaaaatct 175  Q
    |||||||||||| |||| | ||||||||||||  |||||||||||||||||||||    
T  23434225 gtttgattttcaaacaacaaaggcttcaataaccattcctcctattccaaaatct 23434171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 106
Target Start/End: Complemental strand, 23477542 - 23477466
Alignment:
Q  30 ttaattgcacttatctggacacatactccattcaaccgtcattttttaataacatgttacaaaccttctctgaagac 106  Q
    ||||||||||||||||||| ||| |||||| ||||| ||||||| || | |||||| ||||||  |||||| |||||    
T  23477542 ttaattgcacttatctggatacagactccactcaacggtcatttcttgagaacatggtacaaattttctctaaagac 23477466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 285 - 380
Target Start/End: Original strand, 791812 - 791906
Alignment:
Q  285 ttgcaacacatttatagg-gcgtacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataagaaatt 380  Q
    |||||||||||| ||||| |  ||||||||||||| |||   |||||| ||||||| |||||||||| | |||||||||||  |||||||||||||||    
T  791812 ttgcaacacattaataggtgtttacataagaaattacaa---aataatcaaaaaatataaagaaattacgcaatttataggaatttatataagaaatt 791906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #50
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 285 - 349
Target Start/End: Complemental strand, 36826087 - 36826021
Alignment:
Q  285 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaat-aataaaaaatgtaaagaaatt 349  Q
    |||||||||||||||||||  | |||||||||| ||||||||||| | |||||||| ||||||||||    
T  36826087 ttgcaacacatttataggggtttacataagaaactgcaagcaaatcattaaaaaatttaaagaaatt 36826021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #51
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 289 - 385
Target Start/End: Complemental strand, 19644458 - 19644358
Alignment:
Q  289 aacacatttatagggcgt-acataagaaattgcaagcaaataat--aaaaaatgt-aaagaaattgcccaatttataggggtttatataagaaattcata 384  Q
    |||||||||||||||  | |||||||||||||||| ||||||||  ||||||| | ||| ||||||  |||||||||  | ||||||||| |||||||||    
T  19644458 aacacatttatagggaattacataagaaattgcaatcaaataatccaaaaaatctaaaaaaaattgttcaatttataaagatttatataaaaaattcata 19644359  T
Q  385 g 385  Q
    |    
T  19644358 g 19644358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #52
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 55
Target Start/End: Complemental strand, 23403652 - 23403623
Alignment:
Q  26 gccgttaattgcacttatctggacacatac 55  Q
    ||||||||||||||||||||||||||||||    
T  23403652 gccgttaattgcacttatctggacacatac 23403623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 106; Significance: 1e-52; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 284 - 393
Target Start/End: Original strand, 35806790 - 35806899
Alignment:
Q  284 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 383  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35806790 tttgcaacacatttatagggtgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 35806889  T
Q  384 agagatttac 393  Q
    ||||||||||    
T  35806890 agagatttac 35806899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 285 - 393
Target Start/End: Original strand, 22324593 - 22324701
Alignment:
Q  285 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcata 384  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22324593 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcata 22324692  T
Q  385 gagatttac 393  Q
    | |||||||    
T  22324693 gggatttac 22324701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 284 - 393
Target Start/End: Original strand, 21525354 - 21525463
Alignment:
Q  284 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 383  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  21525354 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgtccaatttataggggtttatataagaaattcat 21525453  T
Q  384 agagatttac 393  Q
    || |||||||    
T  21525454 agggatttac 21525463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 284 - 393
Target Start/End: Original strand, 26021391 - 26021501
Alignment:
Q  284 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattca 382  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  26021391 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaaatgtaaagaaattacccaatttataggggtttatataagaaattca 26021490  T
Q  383 tagagatttac 393  Q
    ||| |||||||    
T  26021491 tagggatttac 26021501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 284 - 385
Target Start/End: Complemental strand, 33934501 - 33934400
Alignment:
Q  284 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 383  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||    
T  33934501 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatataaaaaaattgcccaatttataggggtttatataagaaattcat 33934402  T
Q  384 ag 385  Q
    ||    
T  33934401 ag 33934400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 288 - 393
Target Start/End: Original strand, 42013872 - 42013977
Alignment:
Q  288 caacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcatagag 387  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |    
T  42013872 caacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatataaagaaattgcccaatttataggagtttatataagaaattcataggg 42013971  T
Q  388 atttac 393  Q
    ||||||    
T  42013972 atttac 42013977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 284 - 393
Target Start/End: Original strand, 42072424 - 42072533
Alignment:
Q  284 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 383  Q
    |||||||||||||||||  |  ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  42072424 tttgcaacacatttatattgtttacataagaaattgcaagcaaataataaaaaatgtaaagaaattgtccaatttataggggtttatataagaaattcat 42072523  T
Q  384 agagatttac 393  Q
    || |||||||    
T  42072524 agggatttac 42072533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 306 - 392
Target Start/End: Original strand, 24065291 - 24065377
Alignment:
Q  306 tacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcatagagattta 392  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  24065291 tacataagaaattgcaagcaaataataaaaaagctaaagaaattgcccaatttataggagtttatataagaaattcatagagattta 24065377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 284 - 384
Target Start/End: Original strand, 19334778 - 19334879
Alignment:
Q  284 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaa-aatgtaaagaaattgcccaatttataggggtttatataagaaattca 382  Q
    ||||||||| ||||||||||  |||||||||||||| ||||||||||||||| ||| ||||||||||| | ||||||||| ||||||||||| |||||||    
T  19334778 tttgcaacatatttataggggttacataagaaattgtaagcaaataataaaacaatttaaagaaattgtctaatttatagaggtttatataaaaaattca 19334877  T
Q  383 ta 384  Q
    ||    
T  19334878 ta 19334879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 306 - 382
Target Start/End: Original strand, 21488084 - 21488160
Alignment:
Q  306 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattca 382  Q
    ||||||||||||||||||| |||||| ||||||| ||||||||||| ||||||||| ||||||| |||||||||||||    
T  21488084 tacataagaaattgcaagc-aataataaaaaaatctaaagaaattgtccaatttatcggggtttctataagaaattca 21488160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 288 - 393
Target Start/End: Complemental strand, 16819105 - 16818996
Alignment:
Q  288 caacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaatg---taaagaaattgcccaatttataggggtttatataagaaattcat 383  Q
    ||||||||||||||||  | | |||| |||||||||||||||||||||| |     || ||||||| ||||||||||||||||||||||||||||||||     
T  16819105 caacacatttataggggtttatataaaaaattgcaagcaaataataaaatactagatagagaaattacccaatttataggggtttatataagaaattcaa 16819006  T
Q  384 agagatttac 393  Q
     |||||||||    
T  16819005 ggagatttac 16818996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 285 - 380
Target Start/End: Original strand, 10112042 - 10112139
Alignment:
Q  285 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataagaaatt 380  Q
    |||||||| ||||||||||  | ||||||||||||||||  ||||||| |||||||  |||||||||| |||||||||| | ||||||||||||||||    
T  10112042 ttgcaacatatttataggggtttacataagaaattgcaaataaataatcaaaaaattaaaagaaattgtccaatttataagagtttatataagaaatt 10112139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 340 - 393
Target Start/End: Original strand, 16523158 - 16523211
Alignment:
Q  340 taaagaaattgcccaatttataggggtttatataagaaattcatagagatttac 393  Q
    ||||||| ||||||||||||||||| |||||||||||||||||||| |||||||    
T  16523158 taaagaagttgcccaatttatagggatttatataagaaattcatagggatttac 16523211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 306 - 382
Target Start/End: Complemental strand, 43282962 - 43282885
Alignment:
Q  306 tacataagaaattgcaagcaaataataaaaaatg-taaagaaattgcccaatttataggggtttatataagaaattca 382  Q
    |||||||||||| |||||||||||||||||| |  ||| |||||| |||||||||||||| ||||||||| |||||||    
T  43282962 tacataagaaatagcaagcaaataataaaaatttctaatgaaattacccaatttatagggatttatataataaattca 43282885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 284 - 382
Target Start/End: Original strand, 2271196 - 2271289
Alignment:
Q  284 tttgcaacacatttatagggcgt--acataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattc 381  Q
    |||||||||||||||||||| ||  ||||||||||||| |||       |||||||| |||||||||| || ||| ||||||||||||||||||||||||    
T  2271196 tttgcaacacatttatagggggtttacataagaaattgtaag-------taaaaaatctaaagaaattacctaatatataggggtttatataagaaattc 2271288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 306 - 374
Target Start/End: Complemental strand, 34697500 - 34697431
Alignment:
Q  306 tacataagaaattgcaagcaaataataa-aaaatgtaaagaaattgcccaatttataggggtttatataa 374  Q
    |||||||||||||||||||||||||||| ||||  |||||||||| | |||||||||| | |||||||||    
T  34697500 tacataagaaattgcaagcaaataataaaaaaaattaaagaaatttctcaatttatagagatttatataa 34697431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 342 - 393
Target Start/End: Complemental strand, 16591449 - 16591398
Alignment:
Q  342 aagaaattgcccaatttataggggtttatataagaaattcatagagatttac 393  Q
    ||||||||||||||||||||| | |||||||||||||||| |||| ||||||    
T  16591449 aagaaattgcccaatttatagtgatttatataagaaattcttagaaatttac 16591398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 413 - 446
Target Start/End: Original strand, 42014019 - 42014052
Alignment:
Q  413 gcccgggatcgccgggccttagaaccgcccctga 446  Q
    ||||||| ||||||||||||||||||||||||||    
T  42014019 gcccggggtcgccgggccttagaaccgcccctga 42014052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 106; Significance: 1e-52; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 284 - 393
Target Start/End: Complemental strand, 44164875 - 44164766
Alignment:
Q  284 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 383  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44164875 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 44164776  T
Q  384 agagatttac 393  Q
    ||| ||||||    
T  44164775 agaaatttac 44164766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 285 - 393
Target Start/End: Original strand, 34707113 - 34707221
Alignment:
Q  285 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcata 384  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34707113 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcata 34707212  T
Q  385 gagatttac 393  Q
    | |||||||    
T  34707213 gggatttac 34707221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 284 - 393
Target Start/End: Original strand, 10576669 - 10576778
Alignment:
Q  284 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 383  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10576669 tttgcaatacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 10576768  T
Q  384 agagatttac 393  Q
    || |||||||    
T  10576769 agggatttac 10576778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 284 - 381
Target Start/End: Complemental strand, 24320571 - 24320474
Alignment:
Q  284 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattc 381  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24320571 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattc 24320474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 284 - 385
Target Start/End: Complemental strand, 29556071 - 29555970
Alignment:
Q  284 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 383  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  29556071 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgtccaatttataggggtttatataagaaattcat 29555972  T
Q  384 ag 385  Q
    ||    
T  29555971 ag 29555970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 284 - 385
Target Start/End: Complemental strand, 32876662 - 32876561
Alignment:
Q  284 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 383  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  32876662 tttgcaacacatttatagagcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgtccaatttataggggtttatataagaaattcat 32876563  T
Q  384 ag 385  Q
    ||    
T  32876562 ag 32876561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 296 - 393
Target Start/End: Original strand, 34259526 - 34259623
Alignment:
Q  296 ttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcatagagatttac 393  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  34259526 ttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcatagggatttac 34259623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 284 - 393
Target Start/End: Complemental strand, 29238275 - 29238166
Alignment:
Q  284 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 383  Q
    ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||  ||||||| ||||||||||||||||||||||||    
T  29238275 tttgcaacacatttatagggcctacataagaaattgtaagcaaataataaaaaatgtaaagaaattttccaatttttaggggtttatataagaaattcat 29238176  T
Q  384 agagatttac 393  Q
    || |||||||    
T  29238175 agggatttac 29238166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 303 - 393
Target Start/End: Complemental strand, 29981226 - 29981136
Alignment:
Q  303 gcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcatagagatttac 393  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||  ||||||||||||||||||||| |||||||    
T  29981226 gcgtacataagaaattgcaagcaaataataaaaaatataaagaaattgtccaatttatagaagtttatataagaaattcatagggatttac 29981136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 285 - 393
Target Start/End: Complemental strand, 33057789 - 33057680
Alignment:
Q  285 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgcccaatttataggggtttatataagaaattcat 383  Q
    ||||||||||||||||||   |||||||||||||||||||||||||||||||| | |||||||||||  ||||||||||||| |||||||||||||||||    
T  33057789 ttgcaacacatttataggatttacataagaaattgcaagcaaataataaaaaaatctaaagaaattgttcaatttataggggattatataagaaattcat 33057690  T
Q  384 agagatttac 393  Q
    || |||||||    
T  33057689 agggatttac 33057680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 285 - 385
Target Start/End: Complemental strand, 19334693 - 19334591
Alignment:
Q  285 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaa--tgtaaagaaattgcccaatttataggggtttatataagaaattca 382  Q
    |||||||| ||||||||||  || |||||||||||||||||||||||||||||  | ||||||||||| |||||||||||||||||||||||||||||||    
T  19334693 ttgcaacaaatttatagggtttatataagaaattgcaagcaaataataaaaaaaatctaaagaaattgtccaatttataggggtttatataagaaattca 19334594  T
Q  383 tag 385  Q
    |||    
T  19334593 tag 19334591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 285 - 385
Target Start/End: Complemental strand, 17303248 - 17303145
Alignment:
Q  285 ttgcaacacatttatag-ggcgtacataagaaattgcaagcaaataataaaaaa--tgtaaagaaattgcccaatttataggggtttatataagaaattc 381  Q
    ||||||||||||||||| ||  ||||||||||||||||||||||||||||||||  | |||||||||||||||||||| | |||||||||||||||||||    
T  17303248 ttgcaacacatttatagtggtttacataagaaattgcaagcaaataataaaaaaaatctaaagaaattgcccaatttacaagggtttatataagaaattc 17303149  T
Q  382 atag 385  Q
    ||||    
T  17303148 atag 17303145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 285 - 382
Target Start/End: Original strand, 10334173 - 10334272
Alignment:
Q  285 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataataaaaa-atgtaaagaaattgcccaatttataggggtttatataagaaattca 382  Q
    |||||||||||||||||||  | ||||||||||||||||||||||| |||||| || |||||||||||||||||||||| | ||||||||||||||||||    
T  10334173 ttgcaacacatttataggggtttacataagaaattgcaagcaaatattaaaaatatctaaagaaattgcccaatttataagagtttatataagaaattca 10334272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 311 - 382
Target Start/End: Original strand, 9770682 - 9770753
Alignment:
Q  311 aagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattca 382  Q
    ||||||||||||||||||||| |||| | ||||||||||| |||||| |||| |||||||||||||||||||    
T  9770682 aagaaattgcaagcaaataatcaaaagtctaaagaaattgtccaattcatagtggtttatataagaaattca 9770753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 285 - 391
Target Start/End: Complemental strand, 26284510 - 26284404
Alignment:
Q  285 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 383  Q
    |||||||||||||||||||  | ||| ||||||||||||| |||||||||||||| ||||||||||| ||||||||||   |||| |||||||||||||     
T  26284510 ttgcaacacatttataggggtttacaaaagaaattgcaagaaaataataaaaaatctaaagaaattgtccaatttatactagttt-tataagaaattcag 26284412  T
Q  384 agagattt 391  Q
    || |||||    
T  26284411 agggattt 26284404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 332 - 382
Target Start/End: Original strand, 15017817 - 15017867
Alignment:
Q  332 aaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattca 382  Q
    ||||||| ||||||||||| |||||||||| | ||||||||||||||||||    
T  15017817 aaaaaatctaaagaaattgtccaatttatacgcgtttatataagaaattca 15017867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 403 - 445
Target Start/End: Complemental strand, 24320442 - 24320400
Alignment:
Q  403 ttggcccggagcccgggatcgccgggccttagaaccgcccctg 445  Q
    ||||||||||||||||| ||| |||||||||||||||||||||    
T  24320442 ttggcccggagcccgggttcgtcgggccttagaaccgcccctg 24320400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 285 - 380
Target Start/End: Original strand, 41853128 - 41853226
Alignment:
Q  285 ttgcaacacatttatag-ggcgtacataagaaattgcaagcaaataat--aaaaaatgtaaagaaattgcccaatttataggggtttatataagaaatt 380  Q
    ||||||||||||||||| ||  || |||  ||||||||||||||||||  ||||||| |||| |||||| |||| |||||||  |||| ||||||||||    
T  41853128 ttgcaacacatttatagaggtttatatagaaaattgcaagcaaataatcaaaaaaatctaaaaaaattgtccaacttataggaatttaaataagaaatt 41853226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 105; Significance: 5e-52; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 285 - 393
Target Start/End: Complemental strand, 9231985 - 9231877
Alignment:
Q  285 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcata 384  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9231985 ttgcaacacatttatagggcatacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcata 9231886  T
Q  385 gagatttac 393  Q
    |||||||||    
T  9231885 gagatttac 9231877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 103; E-Value: 8e-51
Query Start/End: Original strand, 252 - 393
Target Start/End: Complemental strand, 14309962 - 14309821
Alignment:
Q  252 aggaatattgtaaagcctgggcgnnnnnnnnntttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgc 351  Q
    ||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14309962 aggaatattgtaaagcctgggcaaaaaaaaaatttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgc 14309863  T
Q  352 ccaatttataggggtttatataagaaattcatagagatttac 393  Q
    ||||||||||||| |||||||||||||||||||| |||||||    
T  14309862 ccaatttatagggatttatataagaaattcatagggatttac 14309821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 284 - 393
Target Start/End: Complemental strand, 24694783 - 24694674
Alignment:
Q  284 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 383  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  24694783 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggagtttatataagaaattcat 24694684  T
Q  384 agagatttac 393  Q
    || |||||||    
T  24694683 agggatttac 24694674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 284 - 393
Target Start/End: Original strand, 13627536 - 13627645
Alignment:
Q  284 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 383  Q
    ||||||||| ||||||||| ||||||||||||| | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  13627536 tttgcaacatatttataggacgtacataagaaagtacaagcaaataataaaaaatgtaaagaaattgctcaatttataggggtttatataagaaattcat 13627635  T
Q  384 agagatttac 393  Q
    || |||||||    
T  13627636 agggatttac 13627645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 314 - 393
Target Start/End: Complemental strand, 1728035 - 1727956
Alignment:
Q  314 aaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcatagagatttac 393  Q
    |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||    
T  1728035 aaattgcaaggaaataataaaaaatgtaaagaaattgctcaatttataggggtttatataagaaattcatagggatttac 1727956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 284 - 393
Target Start/End: Original strand, 27863694 - 27863804
Alignment:
Q  284 tttgcaacacatttatagg-gcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattca 382  Q
    ||||||||||||||||||  |  ||||||||||||||||| ||||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||    
T  27863694 tttgcaacacatttatagatgtttacataagaaattgcaaacaaataataaaaaatctaaagaaattgtccaatttataagggtttatataagaaattca 27863793  T
Q  383 tagagatttac 393  Q
     ||| ||||||    
T  27863794 gagaaatttac 27863804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 306 - 382
Target Start/End: Original strand, 34103703 - 34103779
Alignment:
Q  306 tacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattca 382  Q
    ||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||| ||||||||||||||||||||    
T  34103703 tacataagaaattgcaaacaaataataaaaaatctaaagaaatttcccaatttatacgggtttatataagaaattca 34103779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 285 - 382
Target Start/End: Complemental strand, 28750783 - 28750684
Alignment:
Q  285 ttgcaacacatttatagg-gcgtacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattca 382  Q
    |||||||||||||||| | |  ||||||||||||| |||||||||||| ||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  28750783 ttgcaacacatttataagagtttacataagaaattacaagcaaataatcaaaaaaattaaagaaattgcccaatttataggggtttatataagaaattca 28750684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 290 - 382
Target Start/End: Complemental strand, 13103246 - 13103152
Alignment:
Q  290 acacatttatagg-gcgtacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattca 382  Q
    ||||||||||||| |  ||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||  |||||||||||||||||||    
T  13103246 acacatttataggtgtttacattagaaattgcaagcaaataatcaaaaaatctaaagaaattgcccaatttataaaggtttatataagaaattca 13103152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 284 - 337
Target Start/End: Original strand, 11084606 - 11084659
Alignment:
Q  284 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaa 337  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11084606 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaa 11084659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 306 - 382
Target Start/End: Original strand, 11212689 - 11212765
Alignment:
Q  306 tacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattca 382  Q
    ||||||||||||| |||||||||||| |||||| ||||||||||||||||||||||||| |||||| || |||||||    
T  11212689 tacataagaaattacaagcaaataattaaaaatctaaagaaattgcccaatttatagggatttatagaaaaaattca 11212765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 285 - 382
Target Start/End: Original strand, 11279536 - 11279634
Alignment:
Q  285 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattca 382  Q
    ||||||||||||||||| |  | |||||||||||||||||||||||||||||||| |||||||||| || |||||||| |  ||||||||| |||||||    
T  11279536 ttgcaacacatttatagagatttacataagaaattgcaagcaaataataaaaaatctaaagaaattaccaaatttataagaatttatataaaaaattca 11279634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 344 - 382
Target Start/End: Complemental strand, 24497646 - 24497608
Alignment:
Q  344 gaaattgcccaatttataggggtttatataagaaattca 382  Q
    |||||||||||||||||||||||||||||||||||||||    
T  24497646 gaaattgcccaatttataggggtttatataagaaattca 24497608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 340 - 380
Target Start/End: Complemental strand, 8412757 - 8412717
Alignment:
Q  340 taaagaaattgcccaatttataggggtttatataagaaatt 380  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  8412757 taaagaaattgcccaatttataggcgtttatataagaaatt 8412717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 288 - 349
Target Start/End: Complemental strand, 24500830 - 24500767
Alignment:
Q  288 caacacatttata-gggcgtacataagaaattgcaagcaaataataa-aaaatgtaaagaaatt 349  Q
    ||||||||||||| |||  |||||| ||||||||||||||||||||| ||||| ||||||||||    
T  24500830 caacacatttataagggtttacatatgaaattgcaagcaaataataaaaaaatctaaagaaatt 24500767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 102; Significance: 3e-50; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 284 - 393
Target Start/End: Original strand, 23218481 - 23218590
Alignment:
Q  284 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 383  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23218481 tttgcaacacatttatagggagtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 23218580  T
Q  384 agagatttac 393  Q
    || |||||||    
T  23218581 agggatttac 23218590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 284 - 393
Target Start/End: Complemental strand, 37169165 - 37169056
Alignment:
Q  284 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 383  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37169165 tttgccacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 37169066  T
Q  384 agagatttac 393  Q
    || |||||||    
T  37169065 agggatttac 37169056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 285 - 393
Target Start/End: Original strand, 38397595 - 38397703
Alignment:
Q  285 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcata 384  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38397595 ttgcaacacatttataggacgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcata 38397694  T
Q  385 gagatttac 393  Q
    | |||||||    
T  38397695 gggatttac 38397703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 284 - 393
Target Start/End: Complemental strand, 6257542 - 6257433
Alignment:
Q  284 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 383  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  6257542 tttgcaacacatttatagggcgtatataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttgtataagaaattcat 6257443  T
Q  384 agagatttac 393  Q
    || |||||||    
T  6257442 agggatttac 6257433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 242 - 385
Target Start/End: Complemental strand, 39862660 - 39862518
Alignment:
Q  242 cggcgaagccaggaatattgtaaagcctgggcgnnnnnnnnntttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgta 341  Q
    ||||| ||||||||||||||||||||||||||          |||||||||||||| ||||||||| |||||||||||||||||||||||||||||| ||    
T  39862660 cggcggagccaggaatattgtaaagcctgggc-aaaaaaaaatttgcaacacatttttagggcgtatataagaaattgcaagcaaataataaaaaatcta 39862562  T
Q  342 aagaaattgcccaatttataggggtttatataagaaattcatag 385  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  39862561 aagaaattgcccaatttataggggtttatataagaaattcatag 39862518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 285 - 393
Target Start/End: Complemental strand, 16618701 - 16618593
Alignment:
Q  285 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcata 384  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |||||||||||| ||||||||||||||||||||    
T  16618701 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatataaaaaaattgtccaatttataggagtttatataagaaattcata 16618602  T
Q  385 gagatttac 393  Q
    | |||||||    
T  16618601 gggatttac 16618593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 288 - 392
Target Start/End: Original strand, 15631613 - 15631718
Alignment:
Q  288 caacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttata-ggggtttatataagaaattcataga 386  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||     
T  15631613 caacgcatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgtccaatttatagggggtttatataagaaattcatagg 15631712  T
Q  387 gattta 392  Q
    ||||||    
T  15631713 gattta 15631718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 285 - 393
Target Start/End: Original strand, 10081140 - 10081250
Alignment:
Q  285 ttgcaacacatttatagg-gcgtacataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgcccaatttataggggtttatataagaaattca 382  Q
    |||||||||||||||||| |  |||||||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||    
T  10081140 ttgcaacacatttataggagtttacataagaaattgtaagcaaataataaaaaaatctaaagaaattgcccaatttataggggtttatataagaaattca 10081239  T
Q  383 tagagatttac 393  Q
    ||| |||||||    
T  10081240 tagggatttac 10081250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 285 - 393
Target Start/End: Complemental strand, 8457096 - 8456986
Alignment:
Q  285 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgcccaatttataggggtttatataagaaattca 382  Q
    |||||||| ||||||||||  | ||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| ||||||||||||||||    
T  8457096 ttgcaacatatttataggggtttacataagaaattgcaagcaaataataaaaaaatctaaagaaattgcccaatttatagggggttatataagaaattca 8456997  T
Q  383 tagagatttac 393  Q
    ||| |||||||    
T  8456996 tagggatttac 8456986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 284 - 382
Target Start/End: Complemental strand, 36769207 - 36769108
Alignment:
Q  284 tttgcaacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattca 382  Q
    ||||||||||||||||||||  | ||||| ||||||||||||||||||| |||||| ||||||||||||| |||| |||| |||||||||||||||||||    
T  36769207 tttgcaacacatttataggggtttacatatgaaattgcaagcaaataatcaaaaatctaaagaaattgcctaattcatagaggtttatataagaaattca 36769108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 306 - 391
Target Start/End: Complemental strand, 9738094 - 9738008
Alignment:
Q  306 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcatagagattt 391  Q
    |||||||||||||||||||||||||  ||||||| ||||||||||| ||||||||||||| |||||||||||||||||||| |||||    
T  9738094 tacataagaaattgcaagcaaataaacaaaaaatctaaagaaattgtccaatttatagggatttatataagaaattcatagggattt 9738008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 285 - 393
Target Start/End: Original strand, 11856290 - 11856400
Alignment:
Q  285 ttgcaacacatttatagg-gcgtacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattca 382  Q
    |||||||| ||||||||| |  |||||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||| | |||||||||||||||||    
T  11856290 ttgcaacatatttataggagtttacataagaaattgcaagtaaataatcaaaaaatctaaagaaattgcccaatttatagtgatttatataagaaattca 11856389  T
Q  383 tagagatttac 393  Q
     || |||||||    
T  11856390 gagcgatttac 11856400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 285 - 393
Target Start/End: Complemental strand, 25560460 - 25560350
Alignment:
Q  285 ttgcaacacatttata-gggcgtacataagaaattgcaagcaaataataaaa-aatgtaaagaaattgcccaatttataggggtttatataagaaattca 382  Q
    |||||||||||||||| |||  |||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||  |||||||||||||||| |    
T  25560460 ttgcaacacatttatatgggtttacataagaaattgcaagcaaataataaaataatctaaagaaattgtccaatttatagatgtttatataagaaattta 25560361  T
Q  383 tagagatttac 393  Q
    ||  |||||||    
T  25560360 taaggatttac 25560350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 288 - 382
Target Start/End: Complemental strand, 614522 - 614426
Alignment:
Q  288 caacacatttatagg-gcgtacataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgcccaatttataggggtttatataagaaattca 382  Q
    ||||||||||||||| |  |||||||||||||||||||||||||||||||| | ||||||||||||| ||||||||||| ||||||||| |||||||    
T  614522 caacacatttataggtgtttacataagaaattgcaagcaaataataaaaaaatctaaagaaattgccaaatttatagggatttatataaaaaattca 614426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 306 - 382
Target Start/End: Original strand, 6174762 - 6174840
Alignment:
Q  306 tacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttata--ggggtttatataagaaattca 382  Q
    |||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||  |||||||||||||||||||||    
T  6174762 tacataggaaattgcaagcaaataataaaaaatataaagaaattgtccaatttataggggggtttatataagaaattca 6174840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 285 - 382
Target Start/End: Original strand, 42119617 - 42119716
Alignment:
Q  285 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgcccaatttataggggtttatataagaaattca 382  Q
    |||||||||||||||||||  | |||||||||||| ||| |||||||||||||| | ||||||||||| ||||||||||| |||||||||||||||||||    
T  42119617 ttgcaacacatttataggggtttacataagaaattacaaacaaataataaaaaaatctaaagaaattgtccaatttatagaggtttatataagaaattca 42119716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 309 - 382
Target Start/End: Complemental strand, 33271377 - 33271304
Alignment:
Q  309 ataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattca 382  Q
    |||||||||| ||| ||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||    
T  33271377 ataagaaattacaaacaaataataaaaaatataaagaaattgtccaatttatagaggtttatataagaaattca 33271304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 284 - 382
Target Start/End: Original strand, 27916133 - 27916234
Alignment:
Q  284 tttgcaacacatttatagggcgt--acataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgcccaatttataggggtttatataagaaatt 380  Q
    |||||||||||||||||||  ||  | |||||||||||||| |||||||||||||| | ||| |||||||| ||||||||||| ||||||||||||||||    
T  27916133 tttgcaacacatttataggaggtttatataagaaattgcaaacaaataataaaaaaatctaatgaaattgctcaatttataggagtttatataagaaatt 27916232  T
Q  381 ca 382  Q
    ||    
T  27916233 ca 27916234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 308 - 393
Target Start/End: Complemental strand, 29491521 - 29491437
Alignment:
Q  308 cataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcatagagatttac 393  Q
    |||||||||||||||||||||||| ||||||| ||||| ||||| |||||||||||||| |||||||||||||||||||| ||||||    
T  29491521 cataagaaattgcaagcaaataatcaaaaaatttaaag-aattgtccaatttatagggg-ttatataagaaattcatagaaatttac 29491437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 306 - 384
Target Start/End: Complemental strand, 29790328 - 29790251
Alignment:
Q  306 tacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcata 384  Q
    |||||||||||||  ||||||||||| |||||  ||||||||||||||||||||||  |||||||||||||||||||||    
T  29790328 tacataagaaattaaaagcaaataatcaaaaac-taaagaaattgcccaatttataaaggtttatataagaaattcata 29790251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 314 - 379
Target Start/End: Original strand, 10115185 - 10115251
Alignment:
Q  314 aaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataagaaat 379  Q
    |||||||||||||||||| ||||||| ||||||||||| | ||||||| ||||||||||||||||||    
T  10115185 aaattgcaagcaaataattaaaaaatctaaagaaattgtctaatttattggggtttatataagaaat 10115251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 306 - 374
Target Start/End: Complemental strand, 3341230 - 3341162
Alignment:
Q  306 tacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataa 374  Q
    ||||||| |||||| ||||||||||| |||||  |||||||||| ||||||||||||||| ||||||||    
T  3341230 tacataaaaaattgaaagcaaataatcaaaaagctaaagaaatttcccaatttataggggattatataa 3341162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 332 - 380
Target Start/End: Complemental strand, 19322106 - 19322058
Alignment:
Q  332 aaaaaatgtaaagaaattgcccaatttataggggtttatataagaaatt 380  Q
    ||||||| ||||| |||||||||||||||||| ||||||||||||||||    
T  19322106 aaaaaatctaaagtaattgcccaatttataggagtttatataagaaatt 19322058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 413 - 445
Target Start/End: Original strand, 23218632 - 23218664
Alignment:
Q  413 gcccgggatcgccgggccttagaaccgcccctg 445  Q
    |||||||||||||||||||||||||||||||||    
T  23218632 gcccgggatcgccgggccttagaaccgcccctg 23218664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 307 - 355
Target Start/End: Complemental strand, 33188451 - 33188403
Alignment:
Q  307 acataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaa 355  Q
    |||||||||||| ||||||||||||||||||| ||  ||||||||||||    
T  33188451 acataagaaattacaagcaaataataaaaaatttattgaaattgcccaa 33188403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 311 - 393
Target Start/End: Complemental strand, 10052606 - 10052523
Alignment:
Q  311 aagaaattgcaagcaaataataaaaaatgt-aaagaaattgcccaatttataggggtttatataagaaattcatagagatttac 393  Q
    |||||||||||||||||||||  ||||| | ||||||||| || |||||||||  ||||||||||| | |||| || |||||||    
T  10052606 aagaaattgcaagcaaataatctaaaattttaaagaaattacctaatttatagacgtttatataagtagttcagagggatttac 10052523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 413 - 447
Target Start/End: Complemental strand, 16618551 - 16618517
Alignment:
Q  413 gcccgggatcgccgggccttagaaccgcccctgat 447  Q
    ||||||| |||||||||||||||||||||||||||    
T  16618551 gcccggggtcgccgggccttagaaccgcccctgat 16618517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 285 - 358
Target Start/End: Original strand, 22903252 - 22903329
Alignment:
Q  285 ttgcaacacatttatag-ggcgtacataagaaattgcaagcaaata--ataaaaaatg-taaagaaattgcccaattt 358  Q
    ||||||||||||||||| ||  |||||||||||||||||||||| |  ||||||||   |||||||||||||||||||    
T  22903252 ttgcaacacatttatagaggtttacataagaaattgcaagcaaaaagaataaaaaaaactaaagaaattgcccaattt 22903329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 413 - 446
Target Start/End: Complemental strand, 37169014 - 37168981
Alignment:
Q  413 gcccgggatcgccgggccttagaaccgcccctga 446  Q
    ||||||| ||||||||||||||||||||||||||    
T  37169014 gcccggggtcgccgggccttagaaccgcccctga 37168981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 102; Significance: 3e-50; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 284 - 393
Target Start/End: Original strand, 1535767 - 1535876
Alignment:
Q  284 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 383  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1535767 tttgcaacacatttatagggcatacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 1535866  T
Q  384 agagatttac 393  Q
    || |||||||    
T  1535867 agggatttac 1535876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 284 - 393
Target Start/End: Original strand, 49284353 - 49284462
Alignment:
Q  284 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 383  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49284353 tttgcaacacatttatagggcgtacataagaaattgcaaacaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 49284452  T
Q  384 agagatttac 393  Q
    || |||||||    
T  49284453 agggatttac 49284462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 284 - 385
Target Start/End: Original strand, 25954746 - 25954847
Alignment:
Q  284 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 383  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  25954746 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggagtttatataagaaattcat 25954845  T
Q  384 ag 385  Q
    ||    
T  25954846 ag 25954847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 288 - 385
Target Start/End: Original strand, 34240993 - 34241090
Alignment:
Q  288 caacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcatag 385  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34240993 caacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcatag 34241090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 284 - 393
Target Start/End: Original strand, 52632514 - 52632623
Alignment:
Q  284 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 383  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  52632514 tttgcaacacatttatagggcgtacataagaaattgcaagcaaatattaaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcat 52632613  T
Q  384 agagatttac 393  Q
    || |||||||    
T  52632614 agggatttac 52632623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 284 - 393
Target Start/End: Complemental strand, 37801396 - 37801287
Alignment:
Q  284 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 383  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||    
T  37801396 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaatttgcccaatttatagggatttatataaaaaattcat 37801297  T
Q  384 agagatttac 393  Q
    ||| ||||||    
T  37801296 agaaatttac 37801287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 288 - 393
Target Start/End: Complemental strand, 46583669 - 46583564
Alignment:
Q  288 caacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcatagag 387  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |    
T  46583669 caacacatttatatggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcctaatttataggggtttatataagaaattcataggg 46583570  T
Q  388 atttac 393  Q
    ||||||    
T  46583569 atttac 46583564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 284 - 393
Target Start/End: Complemental strand, 36012317 - 36012208
Alignment:
Q  284 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 383  Q
    ||||||||||||||||| | | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36012317 tttgcaacacatttatatgacatacataaaaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 36012218  T
Q  384 agagatttac 393  Q
    || |||||||    
T  36012217 agggatttac 36012208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 284 - 385
Target Start/End: Original strand, 35018932 - 35019033
Alignment:
Q  284 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 383  Q
    ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||||    
T  35018932 tttgcaacacatttataaggtgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattacctaatttataagggtttatataagaaattcat 35019031  T
Q  384 ag 385  Q
    ||    
T  35019032 ag 35019033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 285 - 385
Target Start/End: Complemental strand, 17888683 - 17888581
Alignment:
Q  285 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgcccaatttataggggtttatataagaaattca 382  Q
    |||||||||||||||||||  | ||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| ||||||||||||||||    
T  17888683 ttgcaacacatttataggggtttacataagaaattgcaagcaaataataaaaaaatctaaagaaattgcccaatttatagggggttatataagaaattca 17888584  T
Q  383 tag 385  Q
    |||    
T  17888583 tag 17888581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 285 - 351
Target Start/End: Complemental strand, 16338375 - 16338309
Alignment:
Q  285 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgc 351  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16338375 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgc 16338309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 285 - 393
Target Start/End: Original strand, 31377385 - 31377495
Alignment:
Q  285 ttgcaacacatttatag-ggcgtacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattca 382  Q
    ||||||||||||||||| ||  |||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||| || ||||||||||||||||    
T  31377385 ttgcaacacatttatagcggtttacataagaaattgcaagcaaatagttaaaaaatctaaagaaattgcccaatttatagagggttatataagaaattca 31377484  T
Q  383 tagagatttac 393  Q
    ||| |||||||    
T  31377485 tagggatttac 31377495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 285 - 381
Target Start/End: Complemental strand, 322682 - 322584
Alignment:
Q  285 ttgcaacacatttatagg-gcgtacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattc 381  Q
    |||||||||||||| ||| |  |||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||    
T  322682 ttgcaacacatttacaggtgtttacataagaaattgcaagcaaataatcaaaaaatttaaagaaattgtccaatttataggggtttatataagaaattc 322584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 311 - 385
Target Start/End: Complemental strand, 16338318 - 16338244
Alignment:
Q  311 aagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcatag 385  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||    
T  16338318 aagaaattgcaagcaaataataaaaaatgtaaagaaattgtccaatttatagggatttatataaaaaattcatag 16338244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 285 - 393
Target Start/End: Original strand, 54090176 - 54090285
Alignment:
Q  285 ttgcaacacatttatagggcgtacataagaaa-ttgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 383  Q
    ||||||||||| |||||||  ||||||| ||| |||||||||||||||||||||| |||| ||||||||||||||||| | |||||||||| |||||||     
T  54090176 ttgcaacacatctatagggtttacataaaaaaattgcaagcaaataataaaaaatctaaaaaaattgcccaatttataagagtttatataataaattcag 54090275  T
Q  384 agagatttac 393  Q
    || |||||||    
T  54090276 agggatttac 54090285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 306 - 393
Target Start/End: Original strand, 20818584 - 20818672
Alignment:
Q  306 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcatagagatttac 393  Q
    ||||||||||||||||| |||||||| ||||||| |||| |||||| |||||||||||| ||||||||||||||||||||| |||||||    
T  20818584 tacataagaaattgcaaacaaataatcaaaaaatctaaaaaaattgaccaatttataggagtttatataagaaattcatagggatttac 20818672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 284 - 393
Target Start/End: Complemental strand, 12792365 - 12792254
Alignment:
Q  284 tttgcaacacatttatagg-gcgtacataagaaattgcaagcaaataata-aaaaatgtaaagaaattgcccaatttataggggtttatataagaaattc 381  Q
    ||||||||||||||||||  |  || |||||||||| ||||||||||||  |||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  12792365 tttgcaacacatttatagatgtttatataagaaatttcaagcaaataatctaaaaatctaaagtaattgcccaatttataggggtttatataagaaattc 12792266  T
Q  382 atagagatttac 393  Q
    | ||| ||||||    
T  12792265 agagaaatttac 12792254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 290 - 382
Target Start/End: Complemental strand, 9742661 - 9742567
Alignment:
Q  290 acacatttatagg-gcgtacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattca 382  Q
    ||||||||||||| |  |||||||||||||||| | ||||||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||    
T  9742661 acacatttataggtgtttacataagaaattgcatgaaaataatcaaaaaatctaaagaaattgcccaatttataggggttaatataagaaattca 9742567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 315 - 393
Target Start/End: Complemental strand, 10094495 - 10094416
Alignment:
Q  315 aattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcatagagatttac 393  Q
    ||||||||||||||||| ||||||| |||| ||||| |||||||||||||||||||||||||||||||| ||| ||||||    
T  10094495 aattgcaagcaaataatcaaaaaatctaaataaattacccaatttataggggtttatataagaaattcagagaaatttac 10094416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 285 - 393
Target Start/End: Original strand, 11054448 - 11054561
Alignment:
Q  285 ttgcaacacatttatag-ggcgtacataagaaattgcaagcaaataat---aaaaaatg-taaagaaattgcccaatttataggggtttatataagaaat 379  Q
    ||||||||||||||||  ||  |||||||||||||||||||||||||    |||||||  |||||| |||||||||||||||| ||||||||||||||||    
T  11054448 ttgcaacacatttataaaggtttacataagaaattgcaagcaaataaataaaaaaaatactaaagagattgcccaatttatagaggtttatataagaaat 11054547  T
Q  380 tcatagagatttac 393  Q
    |||||| |||||||    
T  11054548 tcatagggatttac 11054561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 284 - 380
Target Start/End: Original strand, 50328790 - 50328888
Alignment:
Q  284 tttgcaacacatttata-gggcgtacataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgcccaatttataggggtttatataagaaatt 380  Q
    ||||||||||||||||| |||  ||||||| ||||||||||  |||||||||||| | ||||||||||| ||||||||||| |||||||||||||||||    
T  50328790 tttgcaacacatttataagggtttacataaaaaattgcaagtgaataataaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaatt 50328888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 285 - 392
Target Start/End: Complemental strand, 35322837 - 35322728
Alignment:
Q  285 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattca 382  Q
    ||||||||| |||||||||  | | ||||||||||||||||||||||| ||||||| |||||||||||  |||||||||| ||||||||||||| |||||    
T  35322837 ttgcaacacttttataggggtttatataagaaattgcaagcaaataatcaaaaaatctaaagaaattgttcaatttatagaggtttatataagagattca 35322738  T
Q  383 tagagattta 392  Q
     ||| |||||    
T  35322737 gagaaattta 35322728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 284 - 382
Target Start/End: Original strand, 46473988 - 46474088
Alignment:
Q  284 tttgcaacacatttatagggcgt-acataagaaattgcaagcaaataata-aaaaatgtaaagaaattgcccaatttataggggtttatataagaaattc 381  Q
    ||||||||||||||||| ||  | |||||||||||| ||||||||||||| |||||| |||||||||||  ||||||||| |||||||||||| ||||||    
T  46473988 tttgcaacacatttataaggatttacataagaaattacaagcaaataatacaaaaatctaaagaaattgtacaatttatatgggtttatataaaaaattc 46474087  T
Q  382 a 382  Q
    |    
T  46474088 a 46474088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 332 - 393
Target Start/End: Original strand, 47084056 - 47084117
Alignment:
Q  332 aaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcatagagatttac 393  Q
    ||||||| |||||||||| |||||||||||||||||||||||||||||||| ||| ||||||    
T  47084056 aaaaaatctaaagaaattacccaatttataggggtttatataagaaattcagagaaatttac 47084117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 121 - 172
Target Start/End: Original strand, 12898192 - 12898243
Alignment:
Q  121 gtttgattttcagacaatagaggcttcaataattattcctcctattccaaaa 172  Q
    |||||||||||| ||||||||||| |||||| ||||||||||||||||||||    
T  12898192 gtttgattttcaaacaatagaggcgtcaatagttattcctcctattccaaaa 12898243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 403 - 446
Target Start/End: Original strand, 34241118 - 34241161
Alignment:
Q  403 ttggcccggagcccgggatcgccgggccttagaaccgcccctga 446  Q
    ||||||||||||||||| ||||||||||||||||||||||||||    
T  34241118 ttggcccggagcccggggtcgccgggccttagaaccgcccctga 34241161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 306 - 382
Target Start/End: Complemental strand, 19124849 - 19124772
Alignment:
Q  306 tacataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgcccaatttataggggtttatataagaaattca 382  Q
    |||||||||||||| ||| ||||||||||||| | |||||||||||  ||||||| ||  ||||||||||||||||||    
T  19124849 tacataagaaattgtaagtaaataataaaaaaatttaaagaaattgatcaatttacagatgtttatataagaaattca 19124772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 332 - 380
Target Start/End: Complemental strand, 5780838 - 5780790
Alignment:
Q  332 aaaaaatgtaaagaaattgcccaatttataggggtttatataagaaatt 380  Q
    ||||||| |||||||||||||||||||||| || |||||||||||||||    
T  5780838 aaaaaatttaaagaaattgcccaatttataaggatttatataagaaatt 5780790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 403 - 442
Target Start/End: Original strand, 25954875 - 25954914
Alignment:
Q  403 ttggcccggagcccgggatcgccgggccttagaaccgccc 442  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  25954875 ttggcccggagcccggggtcgccgggccttagaaccgccc 25954914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 413 - 446
Target Start/End: Complemental strand, 16338194 - 16338161
Alignment:
Q  413 gcccgggatcgccgggccttagaaccgcccctga 446  Q
    ||||||| ||||||||||||||||||||||||||    
T  16338194 gcccggggtcgccgggccttagaaccgcccctga 16338161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 102; Significance: 3e-50; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 284 - 393
Target Start/End: Complemental strand, 14186570 - 14186461
Alignment:
Q  284 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 383  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  14186570 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaagtgtaaagaaattgcccaatttataggggtttatataagaaattcat 14186471  T
Q  384 agagatttac 393  Q
    || |||||||    
T  14186470 agggatttac 14186461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 284 - 393
Target Start/End: Complemental strand, 14942176 - 14942067
Alignment:
Q  284 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 383  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14942176 tttgcaacacatttataaggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 14942077  T
Q  384 agagatttac 393  Q
    || |||||||    
T  14942076 agggatttac 14942067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 284 - 393
Target Start/End: Complemental strand, 42769890 - 42769781
Alignment:
Q  284 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 383  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42769890 tttgcaacacatttatagggcatacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 42769791  T
Q  384 agagatttac 393  Q
    || |||||||    
T  42769790 agggatttac 42769781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 285 - 393
Target Start/End: Original strand, 29846439 - 29846547
Alignment:
Q  285 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcata 384  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  29846439 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgtccaatttataggggtttatataagaaattcata 29846538  T
Q  385 gagatttac 393  Q
    | |||||||    
T  29846539 gggatttac 29846547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 284 - 385
Target Start/End: Original strand, 19181544 - 19181645
Alignment:
Q  284 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 383  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19181544 tttgcaacacatttatagggcatacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 19181643  T
Q  384 ag 385  Q
    ||    
T  19181644 ag 19181645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 284 - 393
Target Start/End: Complemental strand, 40277420 - 40277311
Alignment:
Q  284 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 383  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||    
T  40277420 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaatttat 40277321  T
Q  384 agagatttac 393  Q
    || |||||||    
T  40277320 agggatttac 40277311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 284 - 392
Target Start/End: Complemental strand, 1387421 - 1387312
Alignment:
Q  284 tttgcaacacatttata-gggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattca 382  Q
    |||||||||||||| || |||  ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |||||||||||    
T  1387421 tttgcaacacatttgtaagggtttacataagaaattgcaagcaaataataaaaaatctaaagaaattacccaatttataggggtttatctaagaaattca 1387322  T
Q  383 tagagattta 392  Q
    ||| ||||||    
T  1387321 tagggattta 1387312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 284 - 380
Target Start/End: Complemental strand, 3597999 - 3597903
Alignment:
Q  284 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaatt 380  Q
    ||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |||| | ||||||||    
T  3597999 tttgcaatacatttatagggcgtacgtaagaaattgcaagtaaataataaaaaatgtaaagaaattgtccaatttatagggatttacacaagaaatt 3597903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 285 - 393
Target Start/End: Complemental strand, 6318592 - 6318481
Alignment:
Q  285 ttgcaacacatttataggg-cgtacataagaaattgcaagcaaataataaaaaa--tgtaaagaaattgcccaatttataggggtttatataagaaattc 381  Q
    ||||||||||||||||||| | |||||  |||||||||||||||||||||||||  | ||||||||||||||||||||||||| ||||||||||||||||    
T  6318592 ttgcaacacatttataggggcttacatttgaaattgcaagcaaataataaaaaaaatctaaagaaattgcccaatttatagggatttatataagaaattc 6318493  T
Q  382 atagagatttac 393  Q
    |||| |||||||    
T  6318492 atagggatttac 6318481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 285 - 393
Target Start/End: Original strand, 3956567 - 3956677
Alignment:
Q  285 ttgcaacacatttatag-ggcgtacataagaaattgcaagcaaataataaaaaatgt-aaagaaattgcccaatttataggggtttatataagaaattca 382  Q
    ||||||||||||||||| ||  |||||  |||||||||||||||||||||||||| | |||||||||| |||||||| |||||||||||||| |||||||    
T  3956567 ttgcaacacatttatagaggtttacatttgaaattgcaagcaaataataaaaaattttaaagaaattgtccaatttacaggggtttatataataaattca 3956666  T
Q  383 tagagatttac 393  Q
    ||| |||||||    
T  3956667 tagggatttac 3956677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 284 - 393
Target Start/End: Complemental strand, 41674841 - 41674729
Alignment:
Q  284 tttgcaacacatttatagggcgt-acataagaaattgcaagcaaataat--aaaaaatgtaaagaaattgcccaatttataggggtttatataagaaatt 380  Q
    ||||||||||||||||||||  | | ||||||||||||||||||||| |  ||||||| ||||||||||| |||||||||| |||||||||||| |||||    
T  41674841 tttgcaacacatttatagggatttatataagaaattgcaagcaaatagttaaaaaaatctaaagaaattgtccaatttataagggtttatataaaaaatt 41674742  T
Q  381 catagagatttac 393  Q
    || ||||||||||    
T  41674741 cagagagatttac 41674729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 309 - 380
Target Start/End: Original strand, 43139766 - 43139839
Alignment:
Q  309 ataagaaattgcaagcaaataataaaaaa--tgtaaagaaattgcccaatttataggggtttatataagaaatt 380  Q
    |||||||||||||||||||||||||||||  | |||||||||||| ||||||||||||||||||||||||||||    
T  43139766 ataagaaattgcaagcaaataataaaaaaaatctaaagaaattgctcaatttataggggtttatataagaaatt 43139839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 284 - 382
Target Start/End: Complemental strand, 14539838 - 14539738
Alignment:
Q  284 tttgcaacacatttatagg-gcgtacataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgcccaatttataggggtttatataagaaattc 381  Q
    ||||||||||||||||||| |  || ||||||||||||||| ||||||||||||| | ||||||||||||| ||||||||||  ||||||||||||||||    
T  14539838 tttgcaacacatttataggtgtttatataagaaattgcaagaaaataataaaaaaatctaaagaaattgcctaatttataggaatttatataagaaattc 14539739  T
Q  382 a 382  Q
    |    
T  14539738 a 14539738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 284 - 392
Target Start/End: Original strand, 33009666 - 33009777
Alignment:
Q  284 tttgcaacacatttata-gggcgtacataagaaattgcaagcaaataataa--aaaatgtaaagaaattgcccaatttataggggtttatataagaaatt 380  Q
    |||||||||| |||||| |||  ||||||| ||||||||||||||||||||  ||||| ||||||||||| |||||||||| || ||||||||| |||||    
T  33009666 tttgcaacacgtttatatgggtttacataaaaaattgcaagcaaataataataaaaatctaaagaaattgtccaatttataaggatttatataacaaatt 33009765  T
Q  381 catagagattta 392  Q
    ||||| ||||||    
T  33009766 catagggattta 33009777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 285 - 382
Target Start/End: Original strand, 40780050 - 40780150
Alignment:
Q  285 ttgcaacacatttatag-ggcgtacataagaaattgcaagcaaataa-taaaaaatgtaaagaaattgcccaatttataggg-gtttatataagaaattc 381  Q
    |||||||| |||||||| ||  ||||||||||||||||||||||||| |||||||| |||| |||||| | ||||||||||| |||||||||||||||||    
T  40780050 ttgcaacatatttatagcggtttacataagaaattgcaagcaaataattaaaaaatttaaaaaaattgtcaaatttatagggtgtttatataagaaattc 40780149  T
Q  382 a 382  Q
    |    
T  40780150 a 40780150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 285 - 382
Target Start/End: Complemental strand, 28321836 - 28321737
Alignment:
Q  285 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattca 382  Q
    |||||||||||||||||||  | | ||||||||||| ||||||||||| |||||||  || |||||||||||||||||| |||||||||||||| |||||    
T  28321836 ttgcaacacatttataggggtttatataagaaattggaagcaaataatcaaaaaattcaatgaaattgcccaatttataagggtttatataagatattca 28321737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 285 - 380
Target Start/End: Complemental strand, 23685503 - 23685406
Alignment:
Q  285 ttgcaacacatttata-gggcgtacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataagaaatt 380  Q
    |||||||| ||||||| |||  |||||||||||||||||||||||||| |||| || |||| |||||| | |||||||| || |||||||||||||||    
T  23685503 ttgcaacatatttataagggtttacataagaaattgcaagcaaataatcaaaatatataaataaattgtcaaatttataaggatttatataagaaatt 23685406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 306 - 393
Target Start/End: Original strand, 2888058 - 2888146
Alignment:
Q  306 tacataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgcccaatttataggggtttatataagaaattcatagagatttac 393  Q
    |||||||||  |||| ||||| |||||||||| | |||| ||||||  ||||||||||| |||||||||| ||||||||||||||||||    
T  2888058 tacataagactttgctagcaattaataaaaaaatctaaaaaaattgttcaatttataggagtttatataaaaaattcatagagatttac 2888146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 309 - 380
Target Start/End: Original strand, 25665244 - 25665316
Alignment:
Q  309 ataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataagaaatt 380  Q
    |||| |||||||||||||||||| ||||||  |||||||||| |||||||||||   ||||||||||||||||    
T  25665244 ataaaaaattgcaagcaaataatcaaaaaacttaaagaaattacccaatttataaatgtttatataagaaatt 25665316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 285 - 367
Target Start/End: Original strand, 32486239 - 32486323
Alignment:
Q  285 ttgcaacacatttatagg-gcgtacataagaaattgcaagcaaataa-taaaaaatgtaaagaaattgcccaatttataggggtt 367  Q
    |||||||||||||||| | |  || |||||||||||||||||||||| |||||||| | || ||||| |||||||||||||||||    
T  32486239 ttgcaacacatttataagtgtttatataagaaattgcaagcaaataattaaaaaatcttaaaaaattacccaatttataggggtt 32486323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 102; Significance: 3e-50; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 284 - 393
Target Start/End: Original strand, 3346782 - 3346891
Alignment:
Q  284 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 383  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  3346782 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgtccaatttataggggtttatataagaaattcat 3346881  T
Q  384 agagatttac 393  Q
    || |||||||    
T  3346882 agggatttac 3346891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 284 - 393
Target Start/End: Complemental strand, 7742911 - 7742802
Alignment:
Q  284 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 383  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7742911 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 7742812  T
Q  384 agagatttac 393  Q
    |  |||||||    
T  7742811 aaggatttac 7742802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 284 - 393
Target Start/End: Original strand, 49902464 - 49902573
Alignment:
Q  284 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 383  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  49902464 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgccctatttataggggtttatataagaaattcat 49902563  T
Q  384 agagatttac 393  Q
    || |||||||    
T  49902564 agggatttac 49902573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 284 - 393
Target Start/End: Complemental strand, 29149680 - 29149571
Alignment:
Q  284 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 383  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  29149680 tttgcaacacatgtatagggcgtacataagaaattgcaagcaaataataaaaaacgtaaagaaattgcccaatttataggggtttatataagaaattcat 29149581  T
Q  384 agagatttac 393  Q
    || |||||||    
T  29149580 agggatttac 29149571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 284 - 393
Target Start/End: Complemental strand, 48392538 - 48392429
Alignment:
Q  284 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 383  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  48392538 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaatgaaattgcccaatttatagggatttatataagaaattcat 48392439  T
Q  384 agagatttac 393  Q
    || |||||||    
T  48392438 agggatttac 48392429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 288 - 393
Target Start/End: Original strand, 5974988 - 5975093
Alignment:
Q  288 caacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcatagag 387  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |    
T  5974988 caacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcctaatttataggggtttatataagaaattcttaggg 5975087  T
Q  388 atttac 393  Q
    ||||||    
T  5975088 atttac 5975093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 284 - 393
Target Start/End: Complemental strand, 42517430 - 42517317
Alignment:
Q  284 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggg----gtttatataagaaat 379  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||    
T  42517430 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttgtttatataagaaat 42517331  T
Q  380 tcatagagatttac 393  Q
    |||||| |||||||    
T  42517330 tcatagggatttac 42517317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 284 - 385
Target Start/End: Complemental strand, 10156148 - 10156047
Alignment:
Q  284 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 383  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||  |||||||||||||||||||    
T  10156148 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatataaagaaattgtccaatttatagaagtttatataagaaattcat 10156049  T
Q  384 ag 385  Q
    ||    
T  10156048 ag 10156047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 284 - 393
Target Start/End: Original strand, 47022698 - 47022807
Alignment:
Q  284 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 383  Q
    ||||||||| ||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||| |||||||||| |||||||||||||||||||    
T  47022698 tttgcaacatatttatagggcgtacataagaaattacaagtaaataataaaaaatataaagaaattgcctaatttataggagtttatataagaaattcat 47022797  T
Q  384 agagatttac 393  Q
    ||||||||||    
T  47022798 agagatttac 47022807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 285 - 385
Target Start/End: Original strand, 23908282 - 23908382
Alignment:
Q  285 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcata 384  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| ||||||||||||| |||||||||||||||||||    
T  23908282 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaacataaagaaattgtccaatttatagggatttatataagaaattcata 23908381  T
Q  385 g 385  Q
    |    
T  23908382 g 23908382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 288 - 385
Target Start/End: Original strand, 38859849 - 38859948
Alignment:
Q  288 caacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgcccaatttataggggtttatataagaaattcatag 385  Q
    ||||||||||||||||  | ||||||||||||||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||    
T  38859849 caacacatttataggggtttacataagaaattgcaagcaaataataaaaaaatctaaaaaaattgcccaatttataggggtttatataagaaattcatag 38859948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 285 - 382
Target Start/End: Complemental strand, 10907781 - 10907682
Alignment:
Q  285 ttgcaacacatttatagg-gcgtacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattca 382  Q
    |||||||||||||||||| |  |||||||||||||||||||||||||| ||||||| ||||||||||| |  ||||||||||||||||||||||||||||    
T  10907781 ttgcaacacatttataggtgtctacataagaaattgcaagcaaataatcaaaaaatctaaagaaattgtctgatttataggggtttatataagaaattca 10907682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 313 - 381
Target Start/End: Original strand, 5558334 - 5558402
Alignment:
Q  313 gaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattc 381  Q
    ||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||    
T  5558334 gaaattgcaagcaaataatcaaaaatctaaagaaattgtccaatttataggggtttatataagaaattc 5558402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 284 - 384
Target Start/End: Original strand, 26835332 - 26835434
Alignment:
Q  284 tttgcaacacatttata-gggcgtacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattc 381  Q
    ||||||||||||||||| |||  ||||| |||||||||||||||||||| ||||||| |||| ||||||  ||||||||||| |||||||||||||||||    
T  26835332 tttgcaacacatttatatgggtttacatgagaaattgcaagcaaataatcaaaaaatctaaaaaaattgttcaatttataggagtttatataagaaattc 26835431  T
Q  382 ata 384  Q
    |||    
T  26835432 ata 26835434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 306 - 393
Target Start/End: Original strand, 30745361 - 30745449
Alignment:
Q  306 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcatagagatttac 393  Q
    |||||||||||||||||| ||||||| ||||||| ||||||||||| ||||||||||||| |||||| |||||||||| ||| ||||||    
T  30745361 tacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagggatttataaaagaaattcagagaaatttac 30745449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 306 - 393
Target Start/End: Original strand, 30766812 - 30766900
Alignment:
Q  306 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcatagagatttac 393  Q
    |||||||||||||||||| ||||||| ||||||| ||||||||||| ||||||||||||| |||||| |||||||||| ||| ||||||    
T  30766812 tacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagggatttataaaagaaattcagagaaatttac 30766900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 285 - 385
Target Start/End: Original strand, 42456566 - 42456669
Alignment:
Q  285 ttgcaacacatttatagggcgt--acataagaaattgcaagcaaataataaaaaatgt-aaagaaattgcccaatttataggggtttatataagaaattc 381  Q
    |||||||||||||||||||  |  ||||||||||||||||| | ||||||||   | | |||||||||||||||||||||||||||||||||||||||||    
T  42456566 ttgcaacacatttataggggatttacataagaaattgcaagtagataataaatttttttaaagaaattgcccaatttataggggtttatataagaaattc 42456665  T
Q  382 atag 385  Q
    ||||    
T  42456666 atag 42456669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 306 - 374
Target Start/End: Complemental strand, 30252856 - 30252787
Alignment:
Q  306 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataa 374  Q
    |||||||||||||||||||||||||| ||||||| ||||||| ||| | ||||||||||| |||||||||    
T  30252856 tacataagaaattgcaagcaaataatcaaaaaatctaaagaagttgtctaatttatagggatttatataa 30252787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 345 - 393
Target Start/End: Original strand, 37189697 - 37189745
Alignment:
Q  345 aaattgcccaatttataggggtttatataagaaattcatagagatttac 393  Q
    |||||| ||||||||||| | ||||||||||||||||||||||||||||    
T  37189697 aaattgtccaatttatagagatttatataagaaattcatagagatttac 37189745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 284 - 374
Target Start/End: Complemental strand, 44107522 - 44107430
Alignment:
Q  284 tttgcaacacatttatagggcgt-acataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataa 374  Q
    ||||||||||||||||| ||  | ||||||||||||||||| ||||||| ||||||| | ||||||||    |||||||||||||||||||||    
T  44107522 tttgcaacacatttataaggttttacataagaaattgcaagtaaataatcaaaaaatctgaagaaattaattaatttataggggtttatataa 44107430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 306 - 382
Target Start/End: Original strand, 45968685 - 45968761
Alignment:
Q  306 tacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattca 382  Q
    |||||||||||||||||| ||||||| |||||| || | |||||| |||||||||| | | |||||||| |||||||    
T  45968685 tacataagaaattgcaagtaaataatcaaaaatctataaaaattgtccaatttataagagattatataaaaaattca 45968761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 285 - 382
Target Start/End: Original strand, 14796871 - 14796970
Alignment:
Q  285 ttgcaacacatttata-gggcgtacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattca 382  Q
    |||||| ||||||||| |||  |||||||||||||||||||||||| |  |||||| ||||| ||| ||| |||||||| | || |||||||||||||||    
T  14796871 ttgcaatacatttatacgggtttacataagaaattgcaagcaaatattcgaaaaatctaaagtaatggcctaatttataagtgtgtatataagaaattca 14796970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 285 - 382
Target Start/End: Original strand, 14805745 - 14805844
Alignment:
Q  285 ttgcaacacatttata-gggcgtacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattca 382  Q
    |||||| ||||||||| |||  |||||||||||||||||||||||| |  |||||| ||||| ||| ||| |||||||| | || |||||||||||||||    
T  14805745 ttgcaatacatttatacgggtttacataagaaattgcaagcaaatattcgaaaaatctaaagtaatggcctaatttataagtgtgtatataagaaattca 14805844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 306 - 380
Target Start/End: Original strand, 13131914 - 13131988
Alignment:
Q  306 tacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaatt 380  Q
    |||||||||||||||||| | ||||  |||||  ||||||||||| ||||||||||| | ||||||||| |||||    
T  13131914 tacataagaaattgcaaggagataagtaaaaagctaaagaaattgtccaatttatagtgatttatataaaaaatt 13131988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 310 - 382
Target Start/End: Complemental strand, 26511739 - 26511667
Alignment:
Q  310 taagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattca 382  Q
    |||||||||| ||| ||||||| |||||| ||||||||||   ||||||| |||  |||||||||||||||||    
T  26511739 taagaaattgtaagtaaataatcaaaaatttaaagaaattattcaatttacaggaatttatataagaaattca 26511667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 307 - 349
Target Start/End: Complemental strand, 8430551 - 8430508
Alignment:
Q  307 acataagaaattgcaagcaaataataa-aaaatgtaaagaaatt 349  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||    
T  8430551 acataagaaattgcaagcaaataataaaaaaatttaaagaaatt 8430508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201 (Bit Score: 68; Significance: 6e-30; HSPs: 2)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 452 - 661
Target Start/End: Complemental strand, 10175 - 9969
Alignment:
Q  452 ttcactgtattatctttgaaaacggaaaagaagccgacatacgttgtattagtgacagttatcttgggacattcatttctgattatgtactggtatgctg 551  Q
    |||| |||||||||||||||  ||||||||||| ||||| ||   | |||||| ||| ||||| ||||||||| ||||| ||| ||||| || |||||||    
T  10175 ttcattgtattatctttgaacgcggaaaagaagtcgacagacagcgcattagtcacaattatcatgggacattaatttcagatcatgtattgatatgctg 10076  T
Q  552 gcatgttcacaacagacaagatagtgaaacttatgatttttgcaacttatcatttcaatttctacttcaaggtcacaaggaacaattgtggtgttcaaca 651  Q
    ||||| | |||| |||||||| | || || |||||||| |   |||||||||||| ||||  |||||||||||| ||| ||| |||||||||| ||||||    
T  10075 gcatggttacaatagacaagaaaatggaagttatgattgt---aacttatcatttaaattcatacttcaaggtcccaatgaagaattgtggtggtcaaca 9979  T
Q  652 gaggggataa 661  Q
    ||||||||||    
T  9978 gaggggataa 9969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 122 - 219
Target Start/End: Complemental strand, 10293 - 10196
Alignment:
Q  122 tttgattttcagacaatagaggcttcaataattattcctcctattccaaaatctgatttgtgcagttttatattttgcatcattctttctgtgggctt 219  Q
    ||||||||||||||||| | ||||||||||  ||||| ||||||| |||||||||| |||||  |||| |||||||||||||||||||||| ||||||    
T  10293 tttgattttcagacaatcggggcttcaatatctattcttcctattacaaaatctgacttgtgtggtttcatattttgcatcattctttctgagggctt 10196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 67; Significance: 2e-29; HSPs: 3)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 285 - 351
Target Start/End: Original strand, 54485 - 54551
Alignment:
Q  285 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgc 351  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54485 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgc 54551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079; HSP #2
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 311 - 385
Target Start/End: Original strand, 54542 - 54616
Alignment:
Q  311 aagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcatag 385  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||    
T  54542 aagaaattgcaagcaaataataaaaaatgtaaagaaattgtccaatttatagggatttatataaaaaattcatag 54616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 413 - 446
Target Start/End: Original strand, 54666 - 54699
Alignment:
Q  413 gcccgggatcgccgggccttagaaccgcccctga 446  Q
    ||||||| ||||||||||||||||||||||||||    
T  54666 gcccggggtcgccgggccttagaaccgcccctga 54699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 306 - 393
Target Start/End: Complemental strand, 34563 - 34475
Alignment:
Q  306 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcatagagatttac 393  Q
    |||||||||||||| ||||||||||| ||||||| |||||||| || ||||||||||| | |||||||||  |||||| || |||||||    
T  34563 tacataagaaattgtaagcaaataatcaaaaaatctaaagaaactgtccaatttatagagatttatataaagaattcagagggatttac 34475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 332 - 382
Target Start/End: Complemental strand, 20915 - 20865
Alignment:
Q  332 aaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattca 382  Q
    ||||||| |||| |||||| ||||||||||| | |||||||||||||||||    
T  20915 aaaaaatctaaaaaaattgtccaatttatagagctttatataagaaattca 20865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 335 - 380
Target Start/End: Original strand, 85547 - 85592
Alignment:
Q  335 aaatgtaaagaaattgcccaatttataggggtttatataagaaatt 380  Q
    |||||||||||||||| ||||||||||||| ||| ||||| |||||    
T  85547 aaatgtaaagaaattgtccaatttatagggatttttataaaaaatt 85592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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