View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1162_low_11 (Length: 332)
Name: NF1162_low_11
Description: NF1162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1162_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 157 - 331
Target Start/End: Original strand, 28703742 - 28703915
Alignment:
| Q |
157 |
acctctttaagaccgaaattacctcttcagatatattgtttttctataagatgtttgcagaaatatttgatctacccttgacatgtccttgatagtgtat |
256 |
Q |
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| T |
28703742 |
acctctttaagaccgaaattacctcttcagatatcttgtttttctataagatgtttgcagaaatatttgattaacccttgacatgtccttgat-gtgtat |
28703840 |
T |
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| Q |
257 |
tccgtgttaaatttcattattatcatcaatgttgatattaatgaagaggatcaaatatcctataattaaaagtat |
331 |
Q |
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| T |
28703841 |
ttcgtgtaaaattgcattgttatcattaatgtttatattaatgaagaggatcaaatatcctatagttaaaagtat |
28703915 |
T |
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Target: chr6; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 248 - 330
Target Start/End: Original strand, 26907119 - 26907201
Alignment:
| Q |
248 |
atagtgtattccgtgttaaatttcattattatcatcaatgttgatattaatgaagaggatcaaatatcctataattaaaagta |
330 |
Q |
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| T |
26907119 |
atagtgtatttcgtgttaaattgcattattatcattaatgttgatattaatgaagagggtcaaatatcctatggttaaaagta |
26907201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 239 - 326
Target Start/End: Original strand, 2871543 - 2871630
Alignment:
| Q |
239 |
atgtccttgatagtgtattccgtgttaaatttcattattatcatcaatgttgatattaatgaagaggatcaaatatcctataattaaa |
326 |
Q |
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| T |
2871543 |
atgtccttgataatgtatttcgtgttaatttgcattattatcattaatgttgatattgatgaagaggatcaaatattctatagttaaa |
2871630 |
T |
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