View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1162_low_14 (Length: 236)
Name: NF1162_low_14
Description: NF1162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1162_low_14 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 15 - 236
Target Start/End: Complemental strand, 4137092 - 4136871
Alignment:
| Q |
15 |
cattttccatccacttccccaccgctctaccaaacaaccgtttacgagtttctgcttcatctccttccacgtcatcaaccatcaccgtcgaaaattccac |
114 |
Q |
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| T |
4137092 |
cattttccatccacttccccaccgctctaccaaacaaccgtttacgagtttctgcttcatctccttccacgtcatcaaccatcaccgtcgaaaattccac |
4136993 |
T |
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| Q |
115 |
ctccgacaactccaccgccttcctcatccgcgctcgcaacaagatcggtcttctccaaatcatcaccagagttttcaaaatcctcggtctcaccattgac |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4136992 |
ctccgacaactccaccgccttcctcatccgcgctcgcaacaagatcggtcttctccaaatcatcaccagagttttcaaaatcctcggtctcaccattgac |
4136893 |
T |
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| Q |
215 |
aaagccacagttgaattcgaag |
236 |
Q |
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|||||||||||||||||||||| |
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| T |
4136892 |
aaagccacagttgaattcgaag |
4136871 |
T |
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