View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1162_low_2 (Length: 590)
Name: NF1162_low_2
Description: NF1162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1162_low_2 |
 | |
|
| [»] scaffold0755 (1 HSPs) |
| | |
|
| [»] scaffold0352 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 30 - 584
Target Start/End: Complemental strand, 32440269 - 32439702
Alignment:
| Q |
30 |
ttcccttttcagcatcatcttcaatcttaattcctatcaattgactattcaaattagatctcaaagtttctgcgaagaaaagagaatacgcctgcaaatg |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| || |||| |
|
|
| T |
32440269 |
ttcccttttcagcatcatcttcaatcttaattcctatcaattgactattcaaatcagatctcaaagtttctgagaagaaaagagaatacgccggctaatg |
32440170 |
T |
|
| Q |
130 |
taattggatttccgatgaatgactttcctataatcacgtttttcaggtaagcaattgtaaacggttaatttcttgctcacactttcatcttcgtcactct |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32440169 |
taattggatttccgatgaatgactttcctataatcacgtttttcaggtaagcaattgtaaacggttaatttcttgctcacactttcatcttcgtcactct |
32440070 |
T |
|
| Q |
230 |
attctcacgcctccatatatgaaaatcgatttac--------------aggaaaattgatttttatgtttatctctgtcnnnnnnntaactttgttcttt |
315 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| | |||| ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
32440069 |
attctcacgcctccataaatgaaaatcgatttacccttcaattttcctatgaaagttgatttttatgtttatctctgt-aaaaaaataactttgttcttt |
32439971 |
T |
|
| Q |
316 |
gaatatcagatactcaattacaaatttgtatatnnnnnnnctacgtagattcaattgaatatcttcgcacttcaacgatatcattcaattattatatgag |
415 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
32439970 |
gaatatcaaatactcaattacaaatttgtatatcaaaaaactatgtagattcaattgaatatcttcgcacttcaacgatatccttctattattatatgag |
32439871 |
T |
|
| Q |
416 |
tttcagaaaattttaagagcaattaattacttatttttgtaatttctgctttaggttagatattcaacaccatttttgtttgatttgcagccgttggcaa |
515 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32439870 |
tttcagaaaattttaggagcaattaattacttatttttgtaatttctgatttagcttagatattcaacaccatttttgtttgatttgcagccgttggcag |
32439771 |
T |
|
| Q |
516 |
gctttgttatggtagagatccttaagcaacttttttctcaactgtttgtcccatacacatctctgctcc |
584 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
32439770 |
gctttgttatggtagaggtccttaagcaacttttttctcaactgtttgtcccatactcatctctgctcc |
32439702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 395; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 30 - 583
Target Start/End: Original strand, 11394452 - 11395017
Alignment:
| Q |
30 |
ttcccttttcagcatcatcttcaatcttaattcctatcaattgactattcaaattagatctcaaagtttctgcgaagaaaagagaatacgcctgcaaatg |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||| |||| |
|
|
| T |
11394452 |
ttcccttttcagcatcatcttcaatcttaattcctatcaattgactattcaaatcagatctcaaagtttctgagaagaaa-gagaatacgcctgctaatg |
11394550 |
T |
|
| Q |
130 |
taattggatttccgatgaatgactttcctataatcacgtttttcaggtaagcaattgtaaacggttaatttcttgctcacactttcatcttcgtcactct |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11394551 |
taattggatttccgatgaatgactttcctataatcacgtttttcaggtaagcaattgtaaacggttaatttcttgctcacactttcatcttcgtcactct |
11394650 |
T |
|
| Q |
230 |
attctcacgcctccatatatgaaaatcgatttacag--------------gaaaattgatttttatgtttatctctgtcnnnnnnntaactttgttcttt |
315 |
Q |
| |
|
||||||||||||||||| || ||||||||||||| |||| ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
11394651 |
attctcacgcctccataaatcaaaatcgatttacccttcaattttcctctgaaagttgatttttatgtttatctctgt-aaaaaaataactttgttcttt |
11394749 |
T |
|
| Q |
316 |
gaatatcagatactcaattacaaatttgtatatnnnnnnnctacgtagattcaattgaatatcttcgcacttcaacgatatcattcaattattatatgag |
415 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
11394750 |
gaatatcaaatactcaattacaaatttgtatatcaaaaaactacgtagattcaattgaatatcttcgcacttcaacgatatccttctattattatatgag |
11394849 |
T |
|
| Q |
416 |
tttcagaaaattttaagagcaattaattacttatttttgtaatttctgctttaggttagatattcaacaccatttttgtttgatttgcagccgttggcaa |
515 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11394850 |
tttcagaaaattttaggagcaattaattacttatttttgtaatttctgctttagcttagatattcaacaccatttttgtttgatttgcagccgttggcag |
11394949 |
T |
|
| Q |
516 |
gctttgttatggtagagatccttaagcaacttttttctcaactgtttgtcccatacacatctctgctc |
583 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
11394950 |
gctttgttatggtagaggtccttaagcaacttttttctcaactgtttgtcccatactcatctttgctc |
11395017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 302 - 583
Target Start/End: Complemental strand, 46233377 - 46233096
Alignment:
| Q |
302 |
taactttgttctttgaatatcagatactcaattacaaatttgtatatnnnnnnnctacgtagattcaattgaatatcttcgcacttcaacgatatcattc |
401 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
46233377 |
taactttgttctttgaatatcaaatactcaattacaaatttgtatatcaaaaaactaggtagattcaattgaatatcttcgcacttcaacgatatccttc |
46233278 |
T |
|
| Q |
402 |
aattattatatgagtttcagaaaattttaagagcaattaattacttatttttgtaatttctgctttaggttagatattcaacaccatttttgtttgattt |
501 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
46233277 |
tattattatatgagtttcagaaaattttaggagcaattaattacttatttttgtaatttctgctttagcttagatattcaacgccatttttgtttgattt |
46233178 |
T |
|
| Q |
502 |
gcagccgttggcaagctttgttatggtagagatccttaagcaacttttttctcaactgtttgtcccatacacatctctgctc |
583 |
Q |
| |
|
||||||||||||| | ||||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
46233177 |
gcagccgttggcaggttttgttatggtggaggtccttaagcaacttttttctcaactgtttgtcccatactcatctctgctc |
46233096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 30 - 263
Target Start/End: Complemental strand, 46233637 - 46233404
Alignment:
| Q |
30 |
ttcccttttcagcatcatcttcaatcttaattcctatcaattgactattcaaattagatctcaaagtttctgcgaagaaaagagaatacgcctgcaaatg |
129 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||| |
|
|
| T |
46233637 |
ttcccttttcaacatcatcttcaatcttaattcctatcaattgactattcaaatcagatctcaaagtttctgagaagaaaagagaatacgcctgctaatg |
46233538 |
T |
|
| Q |
130 |
taattggatttccgatgaatgactttcctataatcacgtttttcaggtaagcaattgtaaacggttaatttcttgctcacactttcatcttcgtcactct |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46233537 |
taattggatttccgatgaatgactttcctataatcacgtttttcaagtaagcaattgtaaacggttaatttcttgctcacactttcatcttcgtcactct |
46233438 |
T |
|
| Q |
230 |
attctcacgcctccatatatgaaaatcgatttac |
263 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |
|
|
| T |
46233437 |
attctcacgcctccataaatgaaaatcgatttac |
46233404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 30 - 583
Target Start/End: Original strand, 9208948 - 9209514
Alignment:
| Q |
30 |
ttcccttttcagcatcatcttcaatcttaattcctatcaattgactattcaaattagatctcaaagtttctgcgaagaaaagagaatacgcctgcaaatg |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||| |
|
|
| T |
9208948 |
ttcccttttcagcatcatcttcaatcttaattcctatcaattgactattcaaatcagatctcaaagtttctgagaagaaaagagaatacgcctgctaatg |
9209047 |
T |
|
| Q |
130 |
taattggatttccgatgaatgactttcctataatcacgtttttcaggtaagcaattgtaaacggttaatttcttgctcacactttcatcttcgtcactct |
229 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9209048 |
taattggattaccgatgaatgactttcctataatcacgtttttcaggtaagcaattgtaaacggttaatttcttgctcacactttcatcttcgtcactct |
9209147 |
T |
|
| Q |
230 |
attctcacgcctccatatatgaaaatcgatttacag--------------gaaaattgatttttatgtttatctctgtcnnnnnnntaactttgttcttt |
315 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |||| ||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
9209148 |
attctcacgcctccataaatgaaaatcgatttacccttcaattttcctctgaaagttgatttttatgtttatctatgt-aaaaaaataactttgttcttt |
9209246 |
T |
|
| Q |
316 |
gaatatcagatactcaattacaaatttgtatatnnnnnnnctacgtagattcaattgaatatcttcgcacttcaacgatatcattcaattattatatgag |
415 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
9209247 |
gaatatcaaatactcaattacaaatttgtatatcaaaaaactaggtagattcaattgaatatcttcgcacttcaacgatatccttctattattatatgag |
9209346 |
T |
|
| Q |
416 |
tttcagaaaattttaagagcaattaattacttatttttgtaatttctgctttaggttagatattcaacaccatttttgtttgatttgcagccgttggcaa |
515 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9209347 |
tttcagaaaattttaggagcaattaattacttatttttgtaatttctgctttagcttagatattcaacaccatttttgtttgatttgcagccgttggcag |
9209446 |
T |
|
| Q |
516 |
gctttgttatggtagagatccttaagcaacttttttctcaactgtttgtcccatacacatctctgctc |
583 |
Q |
| |
|
| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
9209447 |
gttttgttatggtagaggtccttaagcaacttttttctcaactgtttgtcccatactcatctctgctc |
9209514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 30 - 583
Target Start/End: Complemental strand, 16262349 - 16261783
Alignment:
| Q |
30 |
ttcccttttcagcatcatcttcaatcttaattcctatcaattgactattcaaattagatctcaaagtttctgcgaagaaaagagaatacgcctgcaaatg |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||| |
|
|
| T |
16262349 |
ttcccttttcagcatcatcttcaatcttaattcctatcaattgactattcaaatcagatctcaaagtttctgagaagaaaagagaatacgcctgctaatg |
16262250 |
T |
|
| Q |
130 |
taattggatttccgatgaatgactttcctataatcacgtttttcaggtaagcaattgtaaacggttaatttcttgctcacactttcatcttcgtcactct |
229 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16262249 |
taattggattttcgatgaatgactttcctataatcacatttttcaggtaagcaattgtaaacggttaatttcttgctcacactttcatcttcgtcactct |
16262150 |
T |
|
| Q |
230 |
attctcacgcctccatatatgaaaatcgatttac--------------aggaaaattgatttttatgtttatctctgtcnnnnnnntaactttgttcttt |
315 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| | |||| ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
16262149 |
attctcacgcctccataaatgaaaatcgatttacccttcaattttcctatgaaagttgatttttatgtttatctctgt-aaaaaaataactttgttcttt |
16262051 |
T |
|
| Q |
316 |
gaatatcagatactcaattacaaatttgtatatnnnnnnnctacgtagattcaattgaatatcttcgcacttcaacgatatcattcaattattatatgag |
415 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
16262050 |
gaatatcaaatactcaattacaaatttgtatatcaaaaaactacgtagattcaattgaatatcttcgcacttcaacgatatccttctattattatatgag |
16261951 |
T |
|
| Q |
416 |
tttcagaaaattttaagagcaattaattacttatttttgtaatttctgctttaggttagatattcaacaccatttttgtttgatttgcagccgttggcaa |
515 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| ||| ||||||| ||||||||| |
|
|
| T |
16261950 |
tttcagaaaattttaggagcaattaattacttatttttgtaatttctgatttagcttagatattcaacaccattttttttttatttgcaaccgttggcag |
16261851 |
T |
|
| Q |
516 |
gctttgttatggtagagatccttaagcaacttttttctcaactgtttgtcccatacacatctctgctc |
583 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
16261850 |
gctttgttatggtagatgtccttaagcaacttttttctcaactgtttgtcccatactcatctctgctc |
16261783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0755 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: scaffold0755
Description:
Target: scaffold0755; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 534 - 583
Target Start/End: Original strand, 2920 - 2969
Alignment:
| Q |
534 |
tccttaagcaacttttttctcaactgtttgtcccatacacatctctgctc |
583 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
2920 |
tccttaagcaacttttttctcaactgtttgtcccatactcatctctgctc |
2969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0352 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0352
Description:
Target: scaffold0352; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 241
Target Start/End: Complemental strand, 16378 - 16333
Alignment:
| Q |
196 |
aatttcttgctcacactttcatcttcgtcactctattctcacgcct |
241 |
Q |
| |
|
||||| |||||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
16378 |
aattttttgctcaccctttcatctttttcactctattctcacgcct |
16333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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