View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1162_low_4 (Length: 563)
Name: NF1162_low_4
Description: NF1162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1162_low_4 |
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| [»] scaffold0011 (2 HSPs) |
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Alignment Details
Target: scaffold0011 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 7 - 298
Target Start/End: Complemental strand, 240796 - 240505
Alignment:
| Q |
7 |
tcgaataatatggggtgttggatgatttatttcacatgggatagctgacttgtgagacactttaccaatatagaatacgacttgcactttgctcatattg |
106 |
Q |
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| T |
240796 |
tcgaaaaatatggggtgttggatgatttatttcacatgggatagctgacttgtgagacactttaccaatatagaatacgacttgcactttgctcatattg |
240697 |
T |
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| Q |
107 |
caatcttccgagtctcagttttggtaaaattttagcaccttagttaaatagagacataaaatagaacaatacagcaaattccatgtgtgaagccgataag |
206 |
Q |
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| T |
240696 |
caatcttccgagtctcagttttggtaaaattttagcaccttagttaaatagagacataaaatagaacaatacagcaaattccatgtgtgaagccgataag |
240597 |
T |
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| Q |
207 |
agtgtaacacctaaatttgaaagcaaagtaaaatggatttaatttttatacaccggaaaaccgatatgacttgtgaaaccataaatgtgaaa |
298 |
Q |
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| T |
240596 |
agtgtaacacctaaatgtgaaagcaaagtaaaatggatttaatttttatacaccggaaaaccgatatgacttgtgaaaccataaatgtgaaa |
240505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 298 - 527
Target Start/End: Complemental strand, 240461 - 240235
Alignment:
| Q |
298 |
aatttgtatacaccgcactcaatgataccacttttttaggttaatttctaaaacatctctataactaattacttggcatgttttgattagatgcaatata |
397 |
Q |
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| T |
240461 |
aatttgtatacaccgcactcaatgataccacttttttgggttaatttctaaaatatctctataactaattacttggcatgttttgattagatgcaatata |
240362 |
T |
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| Q |
398 |
agcaagtaaaaatagtcacataaaatatgccacacacatacnnnnnnncacccatatcaagtcaaatacacaagcatcctctaatatccaaggaccgtcc |
497 |
Q |
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| T |
240361 |
agtaagt-aaaatagtcacat--aatatgccacacacatacaaaaaaacacccatatcaagtcaaatacacaagcatcctctaatatccaaggaccgtcc |
240265 |
T |
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| Q |
498 |
ttcttcatttgatgcaacatgattacatga |
527 |
Q |
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| T |
240264 |
ttctccatttgatgcaacatgattacatga |
240235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 317 - 355
Target Start/End: Original strand, 44599484 - 44599522
Alignment:
| Q |
317 |
caatgataccacttttttaggttaatttctaaaacatct |
355 |
Q |
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| T |
44599484 |
caatgataccacttctttaggttaatttctaaaatatct |
44599522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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