View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1162_low_7 (Length: 376)
Name: NF1162_low_7
Description: NF1162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1162_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 45 - 361
Target Start/End: Complemental strand, 51060043 - 51059727
Alignment:
| Q |
45 |
taaatatttccaaatggacgtacggactatcatttatttcatttcccttcctcattcttttcttttcacacaacttttccctcctaaatttccaaataga |
144 |
Q |
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| T |
51060043 |
taaatatttccaaatggacgtacggactatcatttatttcatttcccttcctcattcttttcttttcacacaacttttccctcctaaatttccaaataga |
51059944 |
T |
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| Q |
145 |
ttttaaaccgttggaatgtctagatatctttttcaataagtgtacgtattcaatttttactttattttattgtttaatactttgatctatttcattcnnn |
244 |
Q |
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| T |
51059943 |
ttttaaaccgttggaatgtctagatatctttttcaataagtgtacgtattcaatttttactttattttattgtttaatactttgatccatttcattcttt |
51059844 |
T |
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| Q |
245 |
nnnnaatgtccaaaggtgtcagattgataagtaattaacacaagtataacattgtttaatatggagatttggagtgagctcttttggaccagcattacct |
344 |
Q |
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| T |
51059843 |
ttttaatgtccaaaggtgtcagattgataagtaattaacacaagtataacattgtttaatatggagatttggagtgagctcttttggaccagcattacct |
51059744 |
T |
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| Q |
345 |
ccggatgcatgatgatg |
361 |
Q |
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| T |
51059743 |
ccggatgcatgacgatg |
51059727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 286 - 351
Target Start/End: Original strand, 34617982 - 34618047
Alignment:
| Q |
286 |
aagtataacattgtttaatatggagatttggagtgagctcttttggaccagcattacctccggatg |
351 |
Q |
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| T |
34617982 |
aagtataacattgtttaatatggagatttggagtgagctcttttggaccagcattacctccggatg |
34618047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 124 - 185
Target Start/End: Original strand, 34617838 - 34617899
Alignment:
| Q |
124 |
cctcctaaatttccaaatagattttaaaccgttggaatgtctagatatctttttcaataagt |
185 |
Q |
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||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||| |||| |
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| T |
34617838 |
cctcctaaacttccaaatagatgttaaaccattggaatgtctagatatctttttcaacaagt |
34617899 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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