View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11630_high_17 (Length: 235)
Name: NF11630_high_17
Description: NF11630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11630_high_17 |
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Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 13 - 218
Target Start/End: Original strand, 35865506 - 35865711
Alignment:
| Q |
13 |
agaagaacatgattatcaaaagaaggatggtgaaagccaaaacctctcatattgattgtgtggaactgcatcagcttggaaacgttcaggtaaggtaata |
112 |
Q |
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| T |
35865506 |
agaagaacatgattatcaaaagaaggatggtgaaagccaaaacctctcatattgattgtgtggaactgcatcagcttggaaacgttcaggtaaggtaata |
35865605 |
T |
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| Q |
113 |
ttgtccggatcagctgaaaattttaagagtcagcataggaatgcttagataaaatgccagcatgaaatgtttagcaaattaaaaaatgaaaaccttgatg |
212 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |
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| T |
35865606 |
ttgtccggatcagctgaaaattttaagagtcaacataggaatgcttagataaaatgccaacatgaaatgtttagcaaatcaaaaaatgaaaaccttgatg |
35865705 |
T |
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| Q |
213 |
gtgatg |
218 |
Q |
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|||||| |
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| T |
35865706 |
gtgatg |
35865711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 35 - 218
Target Start/End: Original strand, 34815302 - 34815487
Alignment:
| Q |
35 |
aaggatggtgaaagccaaaacctctcatattgattgtgtggaactgcatcagcttggaaacgttcaggtaaggtaatattgtccggatcagctgaaaat- |
133 |
Q |
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|||||||||| |||| ||||||||||| | |||||| ||||| ||||||||||||||| ||||| || ||||||||| || ||| ||||||| ||| |
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| T |
34815302 |
aaggatggtggaagcaaaaacctctcaaaccgattgtaaggaaccgcatcagcttggaaaggttcaaatagggtaatattctcgggagcagctgacaatg |
34815401 |
T |
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| Q |
134 |
tttaagagtcagcataggaatgcttagataaaatgccagcatg-aaatgtttagcaaattaaaaaatgaaaaccttgatggtgatg |
218 |
Q |
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|| ||||||||||||||||| | ||| | ||||| | |||| |||||||||||||||| ||| ||||||||||||||||||||| |
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| T |
34815402 |
ttaaagagtcagcataggaacaatcagacataatgcaaacatgtaaatgtttagcaaattcaaagatgaaaaccttgatggtgatg |
34815487 |
T |
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