View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11630_high_5 (Length: 367)
Name: NF11630_high_5
Description: NF11630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11630_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 19 - 327
Target Start/End: Complemental strand, 32640342 - 32640033
Alignment:
| Q |
19 |
ttcatatcttgacaatgactttctaattcctttacacaattatttggaaaactatttttcttgtttaccatgattttattaaggatttcacaactaattc |
118 |
Q |
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| T |
32640342 |
ttcatatcttgacaatgactttctaattccgttacacaattatttggaaaactatttttcttgtttaccatgattttattaaggatttcacaactaattc |
32640243 |
T |
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| Q |
119 |
aa-aaaactaccttaatttcagtgtgttagagaaatcctaattacaaaccctcaacatacaaatgataaaaccatatgtggtctaacggtattgagttta |
217 |
Q |
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| T |
32640242 |
aaaaaaactacctaaatttcagtgtgttagagaaatcctaattacaaaccctcaacctacaaatgataaaaccatatgtggtctaacggtattgagttta |
32640143 |
T |
|
| Q |
218 |
tattactannnnnnncgttttctcacttgacctctataaatacaccataccatttatccaaattctcaatcatttttccataccattatacttcttttgc |
317 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32640142 |
tattactatttttttcgttttctcacttgacctctataaatacaccataccattcatccaaattctcaatcatttttccataccattatacttcttttgc |
32640043 |
T |
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| Q |
318 |
atcatgcctg |
327 |
Q |
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|||||||||| |
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| T |
32640042 |
atcatgcctg |
32640033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 233 - 319
Target Start/End: Original strand, 32635349 - 32635435
Alignment:
| Q |
233 |
cgttttctcacttgacctctataaatacaccataccatttatccaaattctcaatcatttttccataccattatacttcttttgcat |
319 |
Q |
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| T |
32635349 |
cgttttctcacttgacctctataaatacaccataccattcatccaaattcaaaatcattttttcataccattatacttcttttgcat |
32635435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 264 - 319
Target Start/End: Original strand, 377294 - 377349
Alignment:
| Q |
264 |
ataccatttatccaaattctcaatcatttttccataccattatacttcttttgcat |
319 |
Q |
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| T |
377294 |
ataccattcatccaaattcacaatcattttttcatacatttctacttcttttgcat |
377349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 323
Target Start/End: Original strand, 38349628 - 38349700
Alignment:
| Q |
251 |
ctataaatacaccataccatttatccaaattctcaatcatttttccataccattatacttcttttgcatcatg |
323 |
Q |
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|||| ||| |||||||| ||| |||||||||| ||||||||||| ||||| || ||||| ||||| |||||| |
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| T |
38349628 |
ctattaattcaccatactattcatccaaattcacaatcattttttcatacatttctacttattttgaatcatg |
38349700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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