View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11630_low_1 (Length: 510)

Name: NF11630_low_1
Description: NF11630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11630_low_1
NF11630_low_1
[»] chr1 (1 HSPs)
chr1 (7-496)||(35904235-35904724)
[»] chr7 (2 HSPs)
chr7 (7-489)||(47624519-47625001)
chr7 (7-302)||(27539429-27539724)
[»] chr8 (2 HSPs)
chr8 (185-309)||(13973571-13973695)
chr8 (11-63)||(13973814-13973866)
[»] chr4 (7 HSPs)
chr4 (7-62)||(39543049-39543104)
chr4 (7-62)||(39574884-39574939)
chr4 (7-62)||(39509984-39510039)
chr4 (7-62)||(39579417-39579472)
chr4 (84-128)||(21601648-21601692)
chr4 (7-171)||(46271667-46271831)
chr4 (7-63)||(50421836-50421892)
[»] chr2 (2 HSPs)
chr2 (23-285)||(33872682-33872944)
chr2 (206-300)||(11380645-11380739)


Alignment Details
Target: chr1 (Bit Score: 486; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 7 - 496
Target Start/End: Complemental strand, 35904724 - 35904235
Alignment:
Q  7 gaagcaaaggttggagatttgcattggtgctgcaagaggtcttcattaccttcacacaggtgcaaagtacactataattcatagagatgtgaaaacaaca 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35904724 gaagcaaaggttggagatttgcattggtgctgcaagaggtcttcattaccttcacacaggtgcaaagtacactataattcatagagatgtgaaaacaaca 35904625  T
Q  107 aacattcttctagatgaaaattttgttgcaaaggtttcagattttggattgtcgaaaaccggtccaaatatgaaccagggtcatgttagtacagtggtaa 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35904624 aacattcttctagatgaaaattttgttgcaaaggtttcagattttggattgtcgaaaaccggtccaaatatgaaccagggtcatgttagtacagtggtaa 35904525  T
Q  207 aaggtagttttggatatttggatcctgaatattttagaagacaacaattgactgaaaagtctgatgtttactcattcggggttgttctattcgaggcatt 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35904524 aaggtagttttggatatttggatcctgaatattttagaagacaacaattgactgaaaagtctgatgtttactcattcggggttgttctattcgaggcatt 35904425  T
Q  307 gtgttcaagacctgctttaaatcctagccttcaaaaggaacaagttagccttgcagattgggctttgctaaacaaaaggaaaggaaaattggaggatata 406  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35904424 gtgttcaaggcctgctttaaatcctagccttcaaaaggaacaagttagccttgcagattgggctttgctaaacaaaaggaaaggaaaattggaggatata 35904325  T
Q  407 attgatccaaatcttaaaggaaagatcaaccctgaaagcttgaacaagtttgctgatacagctgaaaagtgtctgtctgatcatggactt 496  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35904324 attgatccaaatcttaaaggaaagatcaaccctgaaagcttgaacaagtttgctgatacagctgaaaagtgtctgtctgatcatggactt 35904235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 107; Significance: 2e-53; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 7 - 489
Target Start/End: Original strand, 47624519 - 47625001
Alignment:
Q  7 gaagcaaaggttggagatttgcattggtgctgcaagaggtcttcattaccttcacacaggtgcaaagtacactataattcatagagatgtgaaaacaaca 106  Q
    ||||||||| || ||||| ||||| || ||||||||||| ||||| ||||||||||| || || |||||||| || |||||||||||||| |||||||||    
T  47624519 gaagcaaagattagagatctgcatcggagctgcaagagggcttcactaccttcacacgggggccaagtacaccatcattcatagagatgtcaaaacaaca 47624618  T
Q  107 aacattcttctagatgaaaattttgttgcaaaggtttcagattttggattgtcgaaaaccggtccaaatatgaaccagggtcatgttagtacagtggtaa 206  Q
    || |||||  | || ||||| |    ||| ||||| ||||||||||| ||||| ||||| |||||| || |||||   || ||||||||||| ||||| |    
T  47624619 aatattctcttggacgaaaactggaatgccaaggtatcagattttgggttgtcaaaaactggtccagatttgaacgctggccatgttagtactgtggtga 47624718  T
Q  207 aaggtagttttggatatttggatcctgaatattttagaagacaacaattgactgaaaagtctgatgtttactcattcggggttgttctattcgaggcatt 306  Q
    | ||||||||||| || ||||||||||| || || || || |||||||||||||||||||||||||| |||||||| |||||||| || || || ||  |    
T  47624719 agggtagttttggctacttggatcctgagtacttcaggaggcaacaattgactgaaaagtctgatgtctactcatttggggttgtcctgtttgaagccct 47624818  T
Q  307 gtgttcaagacctgctttaaatcctagccttcaaaaggaacaagttagccttgcagattgggctttgctaaacaaaaggaaaggaaaattggaggatata 406  Q
     ||| | || |||| | | ||||| |  |||| ||||||||||||||| |||||||| ||||| ||||||  |||    |||||||   | ||||||||     
T  47624819 ctgtgccaggcctgttctgaatcccaatcttccaaaggaacaagttagtcttgcagaatgggcattgctatgcaaccaaaaaggaacgctagaggatatt 47624918  T
Q  407 attgatccaaatcttaaaggaaagatcaaccctgaaagcttgaacaagtttgctgatacagctgaaaagtgtctgtctgatca 489  Q
    ||||| || ||||| || ||||  || || || ||||||||| | ||||| |  || ||||||||||||||| |||| |||||    
T  47624919 attgaccccaatctcaagggaacaataaatccagaaagcttgcagaagttcgtggacacagctgaaaagtgtttgtcggatca 47625001  T

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Target: chr7; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 7 - 302
Target Start/End: Original strand, 27539429 - 27539724
Alignment:
Q  7 gaagcaaaggttggagatttgcattggtgctgcaagaggtcttcattaccttcacacaggtgcaaagtacactataattcatagagatgtgaaaacaaca 106  Q
    |||||||||| | ||||| |||||||| |||||  ||||||| || || |||||||| ||||| || || || || || ||  | |||||||| || |||    
T  27539429 gaagcaaaggcttgagatatgcattggagctgctcgaggtctacactatcttcacaccggtgctaaatataccatcatccaccgtgatgtgaagactaca 27539528  T
Q  107 aacattcttctagatgaaaattttgttgcaaaggtttcagattttggattgtcgaaaaccggtccaaatatgaaccagggtcatgttagtacagtggtaa 206  Q
    |||||| | |||||||| || |  || || |||||||| |||||||||||||| ||||| ||||| |   || |  |   |||||| ||||| |||||||    
T  27539529 aacattttactagatgagaagtgggtggccaaggtttctgattttggattgtctaaaacaggtcctacattggataatactcatgtaagtaccgtggtaa 27539628  T
Q  207 aaggtagttttggatatttggatcctgaatattttagaagacaacaattgactgaaaagtctgatgtttactcattcggggttgttctattcgagg 302  Q
    | ||||||||||| || |||||||| ||||| ||||| || |||||| |||| || || || ||||| |||||||| || || |||||||||||||    
T  27539629 agggtagttttggttacttggatccagaatactttaggaggcaacaactgaccgacaaatccgatgtgtactcatttggtgtggttctattcgagg 27539724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 185 - 309
Target Start/End: Complemental strand, 13973695 - 13973571
Alignment:
Q  185 ggtcatgttagtacagtggtaaaaggtagttttggatatttggatcctgaatattttagaagacaacaattgactgaaaagtctgatgtttactcattcg 284  Q
    ||||| |||||||| |  || |||||||||||||| ||| | || ||||| || || || |||||||||||||| |||||||||||||||||||| ||||    
T  13973695 ggtcacgttagtaccgccgtgaaaggtagttttggttatcttgaccctgagtacttcaggagacaacaattgaccgaaaagtctgatgtttactcgttcg 13973596  T
Q  285 gggttgttctattcgaggcattgtg 309  Q
    | || || ||  |||||||||||||    
T  13973595 gagtagtcctgctcgaggcattgtg 13973571  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 11 - 63
Target Start/End: Complemental strand, 13973866 - 13973814
Alignment:
Q  11 caaaggttggagatttgcattggtgctgcaagaggtcttcattaccttcacac 63  Q
    ||||||||||| |||||||||||  | ||||||||||||||||||||||||||    
T  13973866 caaaggttggacatttgcattggatcggcaagaggtcttcattaccttcacac 13973814  T

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Target: chr4 (Bit Score: 44; Significance: 8e-16; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 7 - 62
Target Start/End: Complemental strand, 39543104 - 39543049
Alignment:
Q  7 gaagcaaaggttggagatttgcattggtgctgcaagaggtcttcattaccttcaca 62  Q
    |||||||||| | |||||||||||||||||||| ||||||||||||||||||||||    
T  39543104 gaagcaaaggcttgagatttgcattggtgctgctagaggtcttcattaccttcaca 39543049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 7 - 62
Target Start/End: Complemental strand, 39574939 - 39574884
Alignment:
Q  7 gaagcaaaggttggagatttgcattggtgctgcaagaggtcttcattaccttcaca 62  Q
    |||||||||| | |||||||||||||||||||| ||||||||||||||||||||||    
T  39574939 gaagcaaaggcttgagatttgcattggtgctgctagaggtcttcattaccttcaca 39574884  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 7 - 62
Target Start/End: Complemental strand, 39510039 - 39509984
Alignment:
Q  7 gaagcaaaggttggagatttgcattggtgctgcaagaggtcttcattaccttcaca 62  Q
    |||||||||| | |||||||| ||||||||||| ||||||||||||||||||||||    
T  39510039 gaagcaaaggcttgagatttgtattggtgctgctagaggtcttcattaccttcaca 39509984  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 7 - 62
Target Start/End: Complemental strand, 39579472 - 39579417
Alignment:
Q  7 gaagcaaaggttggagatttgcattggtgctgcaagaggtcttcattaccttcaca 62  Q
    |||||||||| | |||||||| ||||||||||| ||||||||||||||||||||||    
T  39579472 gaagcaaaggcttgagatttgtattggtgctgctagaggtcttcattaccttcaca 39579417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 84 - 128
Target Start/End: Original strand, 21601648 - 21601692
Alignment:
Q  84 ttcatagagatgtgaaaacaacaaacattcttctagatgaaaatt 128  Q
    ||||||||||||||||| |||| ||||||||||||||||||||||    
T  21601648 ttcatagagatgtgaaatcaaccaacattcttctagatgaaaatt 21601692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 7 - 171
Target Start/End: Original strand, 46271667 - 46271831
Alignment:
Q  7 gaagcaaaggttggagatttgcattggtgctgcaagaggtcttcattaccttcacacaggtgcaaagtacactataattcatagagatgtgaaaacaaca 106  Q
    |||||||||| | ||||| |||||||| |||||  ||||||| || || |||||||| ||||| || || || || || ||  | |||||||| || |||    
T  46271667 gaagcaaaggcttgagatatgcattggagctgctcgaggtctacactatcttcacaccggtgctaaatataccatcatccaccgtgatgtgaagactaca 46271766  T
Q  107 aacattcttctagatgaaaattttgttgcaaaggtttcagattttggattgtcgaaaaccggtcc 171  Q
    |||||| | |||||||| || |  || || |||||||| |||||||||||||| ||||| |||||    
T  46271767 aacattttactagatgagaagtgggtggccaaggtttctgattttggattgtctaaaacaggtcc 46271831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 7 - 63
Target Start/End: Complemental strand, 50421892 - 50421836
Alignment:
Q  7 gaagcaaaggttggagatttgcattggtgctgcaagaggtcttcattaccttcacac 63  Q
    ||||||||||||||| ||||||||||||||||||||  | ||| |||||||||||||    
T  50421892 gaagcaaaggttggaaatttgcattggtgctgcaaggagacttgattaccttcacac 50421836  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 23 - 285
Target Start/End: Original strand, 33872682 - 33872944
Alignment:
Q  23 atttgcattggtgctgcaagaggtcttcattaccttcacacaggtgcaaagtacactataattcatagagatgtgaaaacaacaaacattcttctagatg 122  Q
    |||||||| || || ||||||||||||||||| || ||||| ||||||    | | |||||||||  ||||||| || || |||||||||||| ||||||    
T  33872682 atttgcatcggagcagcaagaggtcttcattatctccacaccggtgcatctcaaagtataattcaccgagatgtaaagacgacaaacattcttttagatg 33872781  T
Q  123 aaaattttgttgcaaaggtttcagattttggattgtcgaaaaccggtccaaatatgaaccagggtcatgttagtacagtggtaaaaggtagttttggata 222  Q
    | || |||||||| || ||| | || |||||  | || |||||||||||     |  | |||  ||||||||| |||| ||| ||||||||||| || ||    
T  33872782 ataactttgttgctaaagttgctgactttggcctctccaaaaccggtcctgcactcgatcagactcatgttagcacagcggttaaaggtagtttcggtta 33872881  T
Q  223 tttggatcctgaatattttagaagacaacaattgactgaaaagtctgatgtttactcattcgg 285  Q
    | | ||||| ||||| |||||||| |||||| | || || || || |||||||| ||||||||    
T  33872882 tcttgatccagaatactttagaaggcaacaactcacagagaaatcagatgtttattcattcgg 33872944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 206 - 300
Target Start/End: Original strand, 11380645 - 11380739
Alignment:
Q  206 aaaggtagttttggatatttggatcctgaatattttagaagacaacaattgactgaaaagtctgatgtttactcattcggggttgttctattcga 300  Q
    ||||| |||||||| ||| | ||||| || || || |||||||||||||| || || || || ||||||||||| ||||| |||||||| |||||    
T  11380645 aaaggaagttttggctatctcgatccggagtacttcagaagacaacaattaaccgagaaatcagatgtttactctttcggagttgttcttttcga 11380739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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