View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11630_low_3 (Length: 385)

Name: NF11630_low_3
Description: NF11630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11630_low_3
NF11630_low_3
[»] chr2 (5 HSPs)
chr2 (1-377)||(32785611-32785986)
chr2 (131-340)||(1037536-1037748)
chr2 (276-340)||(44575471-44575535)
chr2 (1-29)||(32786060-32786088)
chr2 (106-194)||(45245106-45245194)
[»] chr8 (8 HSPs)
chr8 (102-340)||(18315145-18315386)
chr8 (244-338)||(32151429-32151523)
chr8 (108-213)||(27922500-27922605)
chr8 (131-216)||(17636400-17636485)
chr8 (102-188)||(32151287-32151373)
chr8 (131-188)||(17628041-17628098)
chr8 (101-194)||(34936184-34936277)
chr8 (131-211)||(21235573-21235653)
[»] chr4 (28 HSPs)
chr4 (145-340)||(1600448-1600646)
chr4 (131-340)||(55908600-55908812)
chr4 (140-340)||(8186963-8187166)
chr4 (131-214)||(1519143-1519226)
chr4 (131-340)||(1548298-1548508)
chr4 (101-214)||(8184031-8184144)
chr4 (103-211)||(553466-553574)
chr4 (284-340)||(12121329-12121385)
chr4 (102-340)||(1524358-1524599)
chr4 (101-303)||(1552676-1552881)
chr4 (131-198)||(659726-659791)
chr4 (284-340)||(1489233-1489289)
chr4 (131-214)||(532204-532287)
chr4 (247-340)||(7225755-7225851)
chr4 (145-215)||(12121457-12121527)
chr4 (145-190)||(12116600-12116645)
chr4 (104-196)||(558486-558578)
chr4 (106-214)||(1513408-1513516)
chr4 (141-213)||(1545798-1545870)
chr4 (145-213)||(7307889-7307957)
chr4 (248-326)||(558630-558711)
chr4 (106-197)||(1508021-1508112)
chr4 (131-214)||(55505109-55505192)
chr4 (101-195)||(570336-570430)
chr4 (164-214)||(1489362-1489412)
chr4 (164-214)||(1537768-1537818)
chr4 (279-320)||(532349-532390)
chr4 (284-340)||(1504983-1505039)
[»] scaffold0295 (1 HSPs)
scaffold0295 (133-340)||(496-706)
[»] chr5 (5 HSPs)
chr5 (108-340)||(32267467-32267699)
chr5 (131-198)||(41901552-41901619)
chr5 (131-213)||(41889556-41889638)
chr5 (131-198)||(37937902-37937969)
chr5 (131-198)||(38267573-38267640)
[»] chr3 (9 HSPs)
chr3 (101-214)||(51113782-51113895)
chr3 (236-338)||(514602-514707)
chr3 (111-214)||(51120894-51120997)
chr3 (131-196)||(27005791-27005856)
chr3 (131-195)||(33093947-33094011)
chr3 (244-338)||(1657375-1657472)
chr3 (130-196)||(37580839-37580905)
chr3 (131-196)||(36811046-36811111)
chr3 (131-196)||(37587573-37587638)
[»] chr6 (10 HSPs)
chr6 (134-214)||(6432179-6432259)
chr6 (228-340)||(7119269-7119381)
chr6 (228-340)||(7131747-7131859)
chr6 (145-198)||(28935078-28935131)
chr6 (131-214)||(6410021-6410104)
chr6 (131-188)||(6394879-6394936)
chr6 (106-198)||(6402850-6402942)
chr6 (131-211)||(12102281-12102361)
chr6 (131-188)||(6585264-6585321)
chr6 (131-191)||(7994206-7994266)
[»] chr1 (6 HSPs)
chr1 (131-198)||(19468516-19468583)
chr1 (247-340)||(9581199-9581295)
chr1 (247-340)||(9586767-9586863)
chr1 (131-213)||(52082596-52082678)
chr1 (130-197)||(9586653-9586720)
chr1 (131-197)||(9581084-9581152)
[»] chr7 (1 HSPs)
chr7 (131-209)||(18724358-18724440)


Alignment Details
Target: chr2 (Bit Score: 339; Significance: 0; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 377
Target Start/End: Complemental strand, 32785986 - 32785611
Alignment:
Q  1 agtattgtatatttgtatatggtatatttagatcagcaattgacagtccatacgacatccgtgtcaacccttgttttgggaatgctagttaacatgcctt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32785986 agtattgtatatttgtatatggtatatttagatcagcaattgacagtccatacgacatccgtgtcaacccttgttttgggaatgctagttaacatgcctt 32785887  T
Q  101 gtaacagtttcaaaagcccatgaaaacttattgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttgggaga 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  32785886 gtaacagtttcaaaagcccatgaaaacttattgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttgggagc 32785787  T
Q  201 tttaaagttcattcgagggtgctcgattcttgaaaagtgggccaaattcaaatgtctaatcttagaacatcttaaaaattgacaaataccttcttcagat 300  Q
    |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32785786 tttaaagttcattcgacggtgctcgattcttgaaaagtggtccaaattcaaatgtctaatcttagaacatcttaaaaattgacaaataccttcttcagat 32785687  T
Q  301 atgttatagcaatagctcaaatcaagtagttgcaaattggnnnnnnntagaagaaaacatcctgatgctttcatctc 377  Q
    ||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||    
T  32785686 atgttatagcaatagctcaaatcaagtagttgcaaattgg-aaaaaatagaagaaaacatcctgatgctttcatctc 32785611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 131 - 340
Target Start/End: Complemental strand, 1037748 - 1037536
Alignment:
Q  131 ttgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttgggagatttaaagttcattcgagggtgctcgattct 230  Q
    ||||||||| ||| |||| |||||||||||  | ||||||||||||||| |||||||||| ||  |||  ||||||||| |||| | |  | |  | |||    
T  1037748 ttgagatcatatagagtgtttcatcatcaacacatgtatgtgacaagttaaacacctctaattcaggaactttaaagtttattctaagtagtttcactct 1037649  T
Q  231 tgaaaagtgggccaaattcaaatgtctaatcttagaacatct---taaaaattgacaaataccttcttcagatatgttatagcaatagctcaaatcaagt 327  Q
    |||| ||| ||| |||||||||||||||| |||| |||||||   ||||| || |||||||||||||||||||||||||| |||  |||||||||||||     
T  1037648 tgaatagtaggctaaattcaaatgtctaaccttacaacatctccttaaaacttcacaaataccttcttcagatatgttatggcaggagctcaaatcaaga 1037549  T
Q  328 agttgcaaattgg 340  Q
    | |||||||||||    
T  1037548 aattgcaaattgg 1037536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 276 - 340
Target Start/End: Complemental strand, 44575535 - 44575471
Alignment:
Q  276 aaattgacaaataccttcttcagatatgttatagcaatagctcaaatcaagtagttgcaaattgg 340  Q
    ||||| ||||||| |||||   ||||||| ||||||| ||||||||||||||| |||||||||||    
T  44575535 aaattcacaaatatcttctatggatatgtaatagcaaaagctcaaatcaagtaattgcaaattgg 44575471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 32786088 - 32786060
Alignment:
Q  1 agtattgtatatttgtatatggtatattt 29  Q
    |||||||||||||||||||||||||||||    
T  32786088 agtattgtatatttgtatatggtatattt 32786060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 194
Target Start/End: Complemental strand, 45245194 - 45245106
Alignment:
Q  106 agtttcaaaagcccatgaaaacttattgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagttt 194  Q
    |||| |||||||||| || ||||  ||||||||||||  |||| |||||||||||   |||| | |||||| ||||||||||| |||||    
T  45245194 agttgcaaaagcccacgacaactctttgagatcacatggagtgtttcatcatcaaccattgtctctgacaaattcaacacctcaagttt 45245106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 88; Significance: 3e-42; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 102 - 340
Target Start/End: Complemental strand, 18315386 - 18315145
Alignment:
Q  102 taacagtttcaaaagcccatgaaaacttattgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttgggagat 201  Q
    |||||||| |||||||| | || ||||  ||||||||||||| |||||||||||||||| | ||||||||||||||||||||||||| |||||||||  |    
T  18315386 taacagttgcaaaagcctacgacaactctttgagatcacatagagtgcttcatcatcaacttttgtatgtgacaagttcaacacctccagtttgggaact 18315287  T
Q  202 ttaaagttcattcgagggtgctcgattcttgaaaagtgggccaaattcaaatgtctaatcttagaaca---tcttaaaaattgacaaataccttcttcag 298  Q
    ||||||||||||| | |  |||  |||||||||    | || || ||||| |||||||||| ||||||   || ||||| ||||||||||||||||||||    
T  18315286 ttaaagttcattccacgtagcttcattcttgaatcacgagctaagttcaactgtctaatctcagaacaacttcgtaaaacttgacaaataccttcttcag 18315187  T
Q  299 atatgttatagcaatagctcaaatcaagtagttgcaaattgg 340  Q
     |||||||| ||| |||||||||||||| |  ||||||||||    
T  18315186 gtatgttatcgcagtagctcaaatcaagcaactgcaaattgg 18315145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 244 - 338
Target Start/End: Original strand, 32151429 - 32151523
Alignment:
Q  244 aaattcaaatgtctaatcttagaacatcttaaaaattgacaaataccttcttcagatatgttatagcaatagctcaaatcaagtagttgcaaatt 338  Q
    ||||||||||| ||||||| ||| |||||||||| ||||||||| ||||||||||||||||||| |||| | ||||||||||| |||||||||||    
T  32151429 aaattcaaatgcctaatctcagagcatcttaaaacttgacaaattccttcttcagatatgttatggcaacacctcaaatcaagcagttgcaaatt 32151523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 108 - 213
Target Start/End: Original strand, 27922500 - 27922605
Alignment:
Q  108 tttcaaaagcccatgaaaacttattgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttgggagatttaaag 207  Q
    |||||||||||||  | ||||  ||||||||| ||||||||||||||||||||   |||||| |||||||||||||||||| | |||||||  || ||||    
T  27922500 tttcaaaagcccacaacaactctttgagatcatataaagtgcttcatcatcaacatttgtatatgacaagttcaacacctccaatttgggaacttcaaag 27922599  T
Q  208 ttcatt 213  Q
    ||||||    
T  27922600 ttcatt 27922605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 131 - 216
Target Start/End: Complemental strand, 17636485 - 17636400
Alignment:
Q  131 ttgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttgggagatttaaagttcattcga 216  Q
    ||||||||||||| | ||||||||| |||| || ||| |||||||||||||||||||| | |||||||  || |||||||||||||    
T  17636485 ttgagatcacatacaatgcttcatcgtcaactcctgtttgtgacaagttcaacacctccaatttgggaacttcaaagttcattcga 17636400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 102 - 188
Target Start/End: Original strand, 32151287 - 32151373
Alignment:
Q  102 taacagtttcaaaagcccatgaaaacttattgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctc 188  Q
    |||||||| ||||||||||  | ||||  ||||||||||||| |||| |||||||||||  ||||||  ||||||||| ||||||||    
T  32151287 taacagttgcaaaagcccactacaactctttgagatcacatagagtgtttcatcatcaaaccttgtacatgacaagtttaacacctc 32151373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 131 - 188
Target Start/End: Complemental strand, 17628098 - 17628041
Alignment:
Q  131 ttgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctc 188  Q
    |||||||||||   ||||||| |||||||| ||| |||||||||||||||||||||||    
T  17628098 ttgagatcacacggagtgctttatcatcaactctagtatgtgacaagttcaacacctc 17628041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 101 - 194
Target Start/End: Complemental strand, 34936277 - 34936184
Alignment:
Q  101 gtaacagtttcaaaagcccatgaaaacttattgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagttt 194  Q
    |||| |||| |||||||||| || ||||  ||| |||  |||| |||| || |||||||| |||||||| |||||||| |||||||||||||||    
T  34936277 gtaatagttgcaaaagcccacgacaactctttgcgatggcatagagtgttttatcatcaactcttgtatatgacaagtccaacacctctagttt 34936184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 131 - 211
Target Start/End: Original strand, 21235573 - 21235653
Alignment:
Q  131 ttgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttgggagatttaaagttca 211  Q
    |||| |||| ||| ||| |||| | ||||| || ||||| |||||||||||||||||| |||||||||  || ||||||||    
T  21235573 ttgaaatcaaatagagttcttcgttatcaactcctgtatatgacaagttcaacacctccagtttgggaacttcaaagttca 21235653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 145 - 340
Target Start/End: Original strand, 1600448 - 1600646
Alignment:
Q  145 agtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttgggagatttaaagttcattcgagggtgctcgattcttgaaaagtgggcca 244  Q
    ||||||||||| ||||  ||||||| |||||||||||||||||| |||||  ||  || |||||||||||   |  |||  ||| ||||| | ||||| |    
T  1600448 agtgcttcatcgtcaacccttgtatatgacaagttcaacacctccagtttaagaacttcaaagttcattcctcgcagcttcattattgaacactgggcta 1600547  T
Q  245 aattcaaatgtctaatcttagaacatct---taaaaattgacaaataccttcttcagatatgttatagcaatagctcaaatcaagtagttgcaaattgg 340  Q
    | |||||||||||||| |||||| ||||   ||||| ||||||||||||||||||||||||||||  ||||  |||||||||||| |||||||||||||    
T  1600548 agttcaaatgtctaattttagaaaatctccttaaaacttgacaaataccttcttcagatatgttaatgcaactgctcaaatcaagcagttgcaaattgg 1600646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 131 - 340
Target Start/End: Complemental strand, 55908812 - 55908600
Alignment:
Q  131 ttgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttgggagatttaaagttcattcgagggtgctcgattct 230  Q
    ||||||||| ||| |||| |||||||||||  | ||||||||||||||| |||||||||| ||  |||  ||||||||| |||| | |  | |  | |||    
T  55908812 ttgagatcatatagagtgtttcatcatcaacacatgtatgtgacaagttaaacacctctaattcaggaactttaaagtttattctaagtagtttcactct 55908713  T
Q  231 tgaaaagtgggccaaattcaaatgtctaatcttagaacatct---taaaaattgacaaataccttcttcagatatgttatagcaatagctcaaatcaagt 327  Q
    |||| ||| ||| |||||||||||||||| |||| |||||||   || || || |||||||||||||||||||||||||| |||  |||||||||||||     
T  55908712 tgaacagtaggctaaattcaaatgtctaaccttacaacatctccttagaacttcacaaataccttcttcagatatgttatggcaggagctcaaatcaaga 55908613  T
Q  328 agttgcaaattgg 340  Q
    | |||||||||||    
T  55908612 aattgcaaattgg 55908600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 140 - 340
Target Start/End: Complemental strand, 8187166 - 8186963
Alignment:
Q  140 cataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttgggagatttaaagttcattcgagggtgctcgattcttgaaaagtg 239  Q
    ||||||||| || |||||||| ||||||||||||||||||||||||||| ||||||| |  || |||||||||||  | | || | | ||||| | |||     
T  8187166 cataaagtgttttatcatcaactcttgtatgtgacaagttcaacacctccagtttggaaatttcaaagttcattccggagagcccaactcttggacagta 8187067  T
Q  240 ggccaaattcaaatgtctaatcttagaacatc---ttaaaaattgacaaataccttcttcagatatgttatagcaatagctcaaatcaagtagttgcaaa 336  Q
    ||| || |||||||  ||||||| | ||||||   | |||| |||||||||||||||||||||||||| ||||||||  ||||||||||| |  ||||||    
T  8187066 ggctaagttcaaatccctaatctcacaacatctcttcaaaacttgacaaataccttcttcagatatgtcatagcaatgactcaaatcaagcaactgcaaa 8186967  T
Q  337 ttgg 340  Q
    ||||    
T  8186966 ttgg 8186963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 131 - 214
Target Start/End: Complemental strand, 1519226 - 1519143
Alignment:
Q  131 ttgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttgggagatttaaagttcattc 214  Q
    ||||||||||||| |||||||  |||||||  ||||||||||||||||||||||||||||||||||||  || |||||||||||    
T  1519226 ttgagatcacatagagtgcttattcatcaacccttgtatgtgacaagttcaacacctctagtttgggaacttcaaagttcattc 1519143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 131 - 340
Target Start/End: Complemental strand, 1548508 - 1548298
Alignment:
Q  131 ttgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttgggagatttaaagttcattcgagggt-gctcgattc 229  Q
    ||||||||||||  |||| |||||||||||| |||||||||||||||||||||||||| |||||||||  || |||||||| || |  || |||  | |     
T  1548508 ttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaaagtagcttcactt 1548409  T
Q  230 ttgaaaagtgggccaaattcaaatgtctaatcttagaacatcttaaaaattgacaaataccttcttcagatatgttatagcaatagctcaaatcaagtag 329  Q
    || ||    | || || ||||| |||||||||||| |||||||||||| || |||||||||||| || ||||||  |  |||||   |||||||||| ||    
T  1548408 ttaaactacgagctaagttcaactgtctaatcttacaacatcttaaaacttcacaaataccttcgtctgatatgccactgcaattaatcaaatcaagcag 1548309  T
Q  330 ttgcaaattgg 340  Q
    |||||||||||    
T  1548308 ttgcaaattgg 1548298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 101 - 214
Target Start/End: Complemental strand, 8184144 - 8184031
Alignment:
Q  101 gtaacagtttcaaaagcccatgaaaacttattgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttgggaga 200  Q
    ||||||||| ||||||||||  | ||||  |||||||  |||| ||||||  |||||||| ||||||||||||||||||||||||||||||||| |||      
T  8184144 gtaacagttccaaaagcccacaacaactctttgagattgcatagagtgctatatcatcaactcttgtatgtgacaagttcaacacctctagtttcggaac 8184045  T
Q  201 tttaaagttcattc 214  Q
    || |||||||||||    
T  8184044 ttcaaagttcattc 8184031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 103 - 211
Target Start/End: Original strand, 553466 - 553574
Alignment:
Q  103 aacagtttcaaaagcccatgaaaacttattgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttgggagatt 202  Q
    ||||||| ||||||||||  | ||||  |||| ||||||| ||||||||||||||||| |||||||  |||||||||||||||||| |||||| ||  ||    
T  553466 aacagttgcaaaagcccagaacaactctttgaaatcacattaagtgcttcatcatcaactcttgtaaatgacaagttcaacacctccagtttgagaactt 553565  T
Q  203 taaagttca 211  Q
    |||||||||    
T  553566 taaagttca 553574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 284 - 340
Target Start/End: Complemental strand, 12121385 - 12121329
Alignment:
Q  284 aaataccttcttcagatatgttatagcaatagctcaaatcaagtagttgcaaattgg 340  Q
    ||||||||||||||||||||||||||||| | ||||||||||| | |||||||||||    
T  12121385 aaataccttcttcagatatgttatagcaaaaactcaaatcaagcaattgcaaattgg 12121329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 102 - 340
Target Start/End: Complemental strand, 1524599 - 1524358
Alignment:
Q  102 taacagtttcaaaagcccatgaaaacttattgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttgggagat 201  Q
    |||||||| |||||||||| || ||||   |||||||| ||| |||| |||||||||||  |||||| ||||||| ||||||||||| |  ||||||  |    
T  1524599 taacagttgcaaaagcccacgacaactctgtgagatcatatagagtgtttcatcatcaacacttgtacgtgacaaattcaacacctccaaattgggaact 1524500  T
Q  202 ttaaagttcattcgagggtgctcgattcttgaaaagtgggccaaattcaaatgtctaatcttagaacat---cttaaaaattgacaaataccttcttcag 298  Q
    | ||||||||||| | |  | || ||| | ||| ||| ||| || |||||||| ||||  ||| |||||   |||||||  |||  ||||||||||||||    
T  1524499 tcaaagttcattccatgaagttctattttagaacagttggctaagttcaaatgcctaagtttacaacatctccttaaaacctgaagaataccttcttcag 1524400  T
Q  299 atatgttatagcaatagctcaaatcaagtagttgcaaattgg 340  Q
    ||| ||   ||||||| || |||||||| || ||||||||||    
T  1524399 atacgtatgagcaataacttaaatcaagcagctgcaaattgg 1524358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 101 - 303
Target Start/End: Complemental strand, 1552881 - 1552676
Alignment:
Q  101 gtaacagtttcaaaagcccatgaaaacttattgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttgggaga 200  Q
    ||||||| | |||||||||| || || |  |||| |||||||  |||| |||||||| |||  ||||||||||||| |||||||| || |||||||||      
T  1552881 gtaacagctgcaaaagcccacgacaattctttgatatcacattgagtgtttcatcattaatatttgtatgtgacaaattcaacacttccagtttgggaat 1552782  T
Q  201 tttaaagttcattcgagggtgct-cgattcttgaaaagt--gggccaaattcaaatgtctaatcttagaacatcttaaaaattgacaaataccttcttca 297  Q
    || |||||||| || | |  ||| |  ||||  |||| |  |||| || |||||||||||||||||| |||||||||||| || |||||||||||| ||     
T  1552781 ttcaaagttcagtccaagtagcttcccttctataaaactatgggctaagttcaaatgtctaatcttacaacatcttaaaacttcacaaataccttcgtct 1552682  T
Q  298 gatatg 303  Q
    ||||||    
T  1552681 gatatg 1552676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 131 - 198
Target Start/End: Original strand, 659726 - 659791
Alignment:
Q  131 ttgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttggga 198  Q
    |||||||||||||  ||| ||||| || ||  ||||||||||||||||||||||||||||||||||||    
T  659726 ttgagatcacata--gtgtttcattattaacacttgtatgtgacaagttcaacacctctagtttggga 659791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 284 - 340
Target Start/End: Complemental strand, 1489289 - 1489233
Alignment:
Q  284 aaataccttcttcagatatgttatagcaatagctcaaatcaagtagttgcaaattgg 340  Q
    |||||||||||||||||||||||||||||||  |||||| ||| | |||||||||||    
T  1489289 aaataccttcttcagatatgttatagcaataagtcaaattaagcaattgcaaattgg 1489233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 131 - 214
Target Start/End: Original strand, 532204 - 532287
Alignment:
Q  131 ttgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttgggagatttaaagttcattc 214  Q
    ||||| ||||||||||   ||||||||||||  |||||| ||||||||||||||||||||| |||||   || |||||||||||    
T  532204 ttgaggtcacataaagcttttcatcatcaatgtttgtatatgacaagttcaacacctctagcttggggacttcaaagttcattc 532287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 247 - 340
Target Start/End: Complemental strand, 7225851 - 7225755
Alignment:
Q  247 ttcaaatgtctaatcttagaacatct---taaaaattgacaaataccttcttcagatatgttatagcaatagctcaaatcaagtagttgcaaattgg 340  Q
    |||||||||||||||||| |||||||   ||||| ||||||||  ||||||||| | ||||||| | || ||||||||||||| || | ||||||||    
T  7225851 ttcaaatgtctaatcttacaacatctccgtaaaacttgacaaaccccttcttcatacatgttatgggaagagctcaaatcaagcagctccaaattgg 7225755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 215
Target Start/End: Complemental strand, 12121527 - 12121457
Alignment:
Q  145 agtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttgggagatttaaagttcattcg 215  Q
    |||| |||||||||||   |||||| ||||||||||||||| ||||||||||||  || ||||||||||||    
T  12121527 agtgtttcatcatcaacatttgtatatgacaagttcaacacttctagtttgggaacttcaaagttcattcg 12121457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 145 - 190
Target Start/End: Complemental strand, 12116645 - 12116600
Alignment:
Q  145 agtgcttcatcatcaattcttgtatgtgacaagttcaacacctcta 190  Q
    |||| |||||||||||  ||||||||||||||||||||||||||||    
T  12116645 agtgattcatcatcaacacttgtatgtgacaagttcaacacctcta 12116600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 196
Target Start/End: Original strand, 558486 - 558578
Alignment:
Q  104 acagtttcaaaagcccatgaaaacttattgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttgg 196  Q
    |||||| |||||||||| || ||||  ||||||||||||  |||||||||||||||||   |||   |||||||||||||||| |||| ||||    
T  558486 acagttccaaaagcccacgacaactctttgagatcacatggagtgcttcatcatcaatatatgttaatgacaagttcaacacccctaggttgg 558578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 214
Target Start/End: Complemental strand, 1513516 - 1513408
Alignment:
Q  106 agtttcaaaagcccatgaaaacttattgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttgggagatttaa 205  Q
    |||| |||||||||| || |||   ||||||| || || |||| |||||||||||   |||||  ||||||||||||||| ||||||||||||  || ||    
T  1513516 agttgcaaaagcccacgacaacactttgagattacgtagagtgtttcatcatcaacatttgtaaatgacaagttcaacacttctagtttgggaacttcaa 1513417  T
Q  206 agttcattc 214  Q
    |||||||||    
T  1513416 agttcattc 1513408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 213
Target Start/End: Original strand, 1545798 - 1545870
Alignment:
Q  141 ataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttgggagatttaaagttcatt 213  Q
    |||||||| ||||||||||| |||||||    |||||||||||||||| ||||| |||  |||||||||||||    
T  1545798 ataaagtgtttcatcatcaactcttgtaaacaacaagttcaacacctccagtttaggaactttaaagttcatt 1545870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 213
Target Start/End: Original strand, 7307889 - 7307957
Alignment:
Q  145 agtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttgggagatttaaagttcatt 213  Q
    |||||||||||||||| |  ||||| |||||||||||| ||||| | |||||||  |||||||||||||    
T  7307889 agtgcttcatcatcaacttctgtatatgacaagttcaatacctccaatttgggaactttaaagttcatt 7307957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 248 - 326
Target Start/End: Original strand, 558630 - 558711
Alignment:
Q  248 tcaaatgtctaatcttagaacat---cttaaaaattgacaaataccttcttcagatatgttatagcaatagctcaaatcaag 326  Q
    ||||||||||||| |||||||||   |||||||  ||||||||||||| ||| ||||| ||||  |||||| ||||||||||    
T  558630 tcaaatgtctaatgttagaacatgtccttaaaacatgacaaatacctttttctgatattttatgacaatagatcaaatcaag 558711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 106 - 197
Target Start/End: Complemental strand, 1508112 - 1508021
Alignment:
Q  106 agtttcaaaagcccatgaaaacttattgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttggg 197  Q
    |||| |||||||||| || |||   ||||||| ||| | |||| |||||||||||   | |||||||||||||||||||| |||||||||||    
T  1508112 agttgcaaaagcccacgacaacactttgagattacacacagtgtttcatcatcaacattggtatgtgacaagttcaacacttctagtttggg 1508021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 131 - 214
Target Start/End: Complemental strand, 55505192 - 55505109
Alignment:
Q  131 ttgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttgggagatttaaagttcattc 214  Q
    ||||| |||||||||||| | |||| ||||   |||||| ||||||||||||||||||||||| |||   | ||||||||||||    
T  55505192 ttgaggtcacataaagtgttccatcgtcaacctttgtatatgacaagttcaacacctctagttgggggactctaaagttcattc 55505109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 195
Target Start/End: Original strand, 570336 - 570430
Alignment:
Q  101 gtaacagtttcaaaagcccatgaaaacttattgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttg 195  Q
    ||||||||| |||||||||  || ||||  |||| |||| ||| ||| |||| | ||||| || ||||| |||||||||||||||||| ||||||    
T  570336 gtaacagttgcaaaagcccgcgacaactctttgaaatcagatagagttcttcgttatcaactcctgtatatgacaagttcaacacctcgagtttg 570430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 214
Target Start/End: Complemental strand, 1489412 - 1489362
Alignment:
Q  164 ttgtatgtgacaagttcaacacctctagtttgggagatttaaagttcattc 214  Q
    |||||| ||||||||||||||| ||||||||||||  || |||||||||||    
T  1489412 ttgtatatgacaagttcaacacttctagtttgggaacttcaaagttcattc 1489362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 214
Target Start/End: Complemental strand, 1537818 - 1537768
Alignment:
Q  164 ttgtatgtgacaagttcaacacctctagtttgggagatttaaagttcattc 214  Q
    |||||| ||||||||||||||| ||||||||||||  || |||||||||||    
T  1537818 ttgtatatgacaagttcaacacttctagtttgggaacttcaaagttcattc 1537768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 320
Target Start/End: Original strand, 532349 - 532390
Alignment:
Q  279 ttgacaaataccttcttcagatatgttatagcaatagctcaa 320  Q
    |||| |||||||||||| |||||||||||| |||||||||||    
T  532349 ttgataaataccttctttagatatgttataacaatagctcaa 532390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 340
Target Start/End: Complemental strand, 1505039 - 1504983
Alignment:
Q  284 aaataccttcttcagatatgttatagcaatagctcaaatcaagtagttgcaaattgg 340  Q
    |||||||||||||||||||||||| |||||| || |||| ||  | |||||||||||    
T  1505039 aaataccttcttcagatatgttatggcaataactaaaattaaccaattgcaaattgg 1504983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0295 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 133 - 340
Target Start/End: Complemental strand, 706 - 496
Alignment:
Q  133 gagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttgggagatttaaagttcattcgagggtgctcgattcttg 232  Q
    ||||||| ||| |||| ||||||||| |  ||||||||||||||||| |||||||||| ||  |||  ||||||||| |||| | |  | |  | |||||    
T  706 gagatcatatagagtgtttcatcatcgacacttgtatgtgacaagttaaacacctctaattcaggaactttaaagtttattctaagtagtttcactcttg 607  T
Q  233 aaaagtgggccaaattcaaatgtctaatcttagaacatct---taaaaattgacaaataccttcttcagatatgttatagcaatagctcaaatcaagtag 329  Q
    || ||| ||| |||||||||||||||  |||| |||||||   || || || |||||||||||||||||||||||||| |||  ||||||||||||| |     
T  606 aacagtaggctaaattcaaatgtctagccttacaacatctccttagaacttcacaaataccttcttcagatatgttatggcaggagctcaaatcaagaaa 507  T
Q  330 ttgcaaattgg 340  Q
    ||| |||||||    
T  506 ttgtaaattgg 496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 108 - 340
Target Start/End: Original strand, 32267467 - 32267699
Alignment:
Q  108 tttcaaaagcccatgaaaacttattgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttgggagatttaaag 207  Q
    |||||||||||||  | ||||  ||||||||| |||||||||||||||||||| | |||| |||||||||||||| ||||| | |||||||  || ||||    
T  32267467 tttcaaaagcccacaacaactctttgagatcatataaagtgcttcatcatcaactattgtttgtgacaagttcaatacctccaatttgggaacttcaaag 32267566  T
Q  208 ttcattcgagggtgctcgattcttgaaaagtgggccaaattcaaatgtctaatcttagaacat---cttaaaaattgacaaataccttcttcagatatgt 304  Q
    ||||||    | | |   | | ||||| | ||||  || |||||||||||||| ||| |||||   ||||||||||||   ||||||||||||||||||     
T  32267567 ttcatttctagtttc---actgttgaacactgggataagttcaaatgtctaatgttacaacatatccttaaaaattgaacgataccttcttcagatatgc 32267663  T
Q  305 tatagcaatagctcaaatcaagtagttgcaaattgg 340  Q
     | | |||| |||||||||||| || ||||||||||    
T  32267664 gacaacaattgctcaaatcaagcagctgcaaattgg 32267699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 131 - 198
Target Start/End: Complemental strand, 41901619 - 41901552
Alignment:
Q  131 ttgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttggga 198  Q
    ||||||||| |||||||||||||||||||| | |||||| |||||||||||||||||| |||||||||    
T  41901619 ttgagatcatataaagtgcttcatcatcaacttttgtatatgacaagttcaacacctccagtttggga 41901552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 131 - 213
Target Start/End: Complemental strand, 41889638 - 41889556
Alignment:
Q  131 ttgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttgggagatttaaagttcatt 213  Q
    ||||||||  |||||||| ||||||||||| | |||||| ||| |||||||||||||| | |||||||  |||||||||||||    
T  41889638 ttgagatcttataaagtgtttcatcatcaacttttgtatatgataagttcaacacctccaatttgggaactttaaagttcatt 41889556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 131 - 198
Target Start/End: Original strand, 37937902 - 37937969
Alignment:
Q  131 ttgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttggga 198  Q
    ||||||| ||||| |||| || |||||||||||||||||||| ||||| ||||||||| || ||||||    
T  37937902 ttgagattacatagagtgtttgatcatcaattcttgtatgtgtcaagtccaacacctcaaggttggga 37937969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 131 - 198
Target Start/End: Complemental strand, 38267640 - 38267573
Alignment:
Q  131 ttgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttggga 198  Q
    ||||||| ||||| ||||  |||||||||| ||||||||||| ||||| ||||||||| || ||||||    
T  38267640 ttgagattacatagagtgtgtcatcatcaactcttgtatgtgtcaagtccaacacctcaaggttggga 38267573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 101 - 214
Target Start/End: Complemental strand, 51113895 - 51113782
Alignment:
Q  101 gtaacagtttcaaaagcccatgaaaacttattgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttgggaga 200  Q
    ||||||||| ||||||||||  | ||||  | ||||||||||| |||| |||||||||||   |||||| ||||||||  |||||||| ||||||||||     
T  51113895 gtaacagttgcaaaagcccacaacaactcttcgagatcacatagagtgtttcatcatcaaccattgtatttgacaagtctaacacctccagtttgggagc 51113796  T
Q  201 tttaaagttcattc 214  Q
    || |||||||||||    
T  51113795 ttcaaagttcattc 51113782  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 236 - 338
Target Start/End: Complemental strand, 514707 - 514602
Alignment:
Q  236 agtgggccaaattcaaatgtctaatcttagaacatct---taaaaattgacaaataccttcttcagatatgttatagcaatagctcaaatcaagtagttg 332  Q
    ||||||| || |||||||| ||||||||||| |||||   ||||| |||||| |||| ||  |||||||||||||  |||||||||||||||| ||| ||    
T  514707 agtgggctaagttcaaatgcctaatcttagaccatctctttaaaacttgacagatacttttgtcagatatgttatcacaatagctcaaatcaattagctg 514608  T
Q  333 caaatt 338  Q
    ||||||    
T  514607 caaatt 514602  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 111 - 214
Target Start/End: Complemental strand, 51120997 - 51120894
Alignment:
Q  111 caaaagcccatgaaaacttattgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttgggagatttaaagttc 210  Q
    |||||||||| || ||||  ||||||| ||||| |||  ||||||||||| ||||||||| ||||||||||||||||| | |||| ||  || |||||||    
T  51120997 caaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttc 51120898  T
Q  211 attc 214  Q
    ||||    
T  51120897 attc 51120894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 131 - 196
Target Start/End: Complemental strand, 27005856 - 27005791
Alignment:
Q  131 ttgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttgg 196  Q
    ||||||| |||||||||| |  || ||||||||||||||||||||||||||| ||||| |||||||    
T  27005856 ttgagattacataaagtgttgtattatcaattcttgtatgtgacaagttcaagacctccagtttgg 27005791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 131 - 195
Target Start/End: Complemental strand, 33094011 - 33093947
Alignment:
Q  131 ttgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttg 195  Q
    |||||||| |||||||| |||||||||||| || ||  | |||||||||||| ||||||||||||    
T  33094011 ttgagatcgcataaagtacttcatcatcaactcatgactttgacaagttcaaaacctctagtttg 33093947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 244 - 338
Target Start/End: Original strand, 1657375 - 1657472
Alignment:
Q  244 aaattcaaatgtctaatcttagaacatct---taaaaattgacaaataccttcttcagatatgttatagcaatagctcaaatcaagtagttgcaaatt 338  Q
    ||||||||||||||||| ||| ||||| |   |||||  |||  ||||||||||||||||||||  | ||||| ||||||||||||||| || |||||    
T  1657375 aaattcaaatgtctaatgttacaacatatcattaaaacatgaacaataccttcttcagatatgtctttgcaatggctcaaatcaagtagctgtaaatt 1657472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 196
Target Start/End: Complemental strand, 37580905 - 37580839
Alignment:
Q  130 attgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttgg 196  Q
    |||||||||||||| | | ||| ||||||||||||||  | |||||||||||| ||||| |||||||    
T  37580905 attgagatcacatacaatactttatcatcaattcttgagtttgacaagttcaatacctcgagtttgg 37580839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 196
Target Start/End: Complemental strand, 36811111 - 36811046
Alignment:
Q  131 ttgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttgg 196  Q
    |||||||  |||| ||||||  || ||||||||||| ||| ||||||||||||||||| |||||||    
T  36811111 ttgagattgcatacagtgctctattatcaattcttgaatgggacaagttcaacacctccagtttgg 36811046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 196
Target Start/End: Complemental strand, 37587638 - 37587573
Alignment:
Q  131 ttgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttgg 196  Q
    |||||||| |||| | | ||| ||||||||||||||  |||||||||||||| ||||| |||||||    
T  37587638 ttgagatcgcatacaatactttatcatcaattcttgagtgtgacaagttcaatacctccagtttgg 37587573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 134 - 214
Target Start/End: Original strand, 6432179 - 6432259
Alignment:
Q  134 agatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttgggagatttaaagttcattc 214  Q
    ||||||||||||||| |||||||||||  ||||||| |||||||||||||||||  || ||||||  || |||||||||||    
T  6432179 agatcacataaagtgtttcatcatcaacgcttgtatttgacaagttcaacaccttcagcttgggaacttcaaagttcattc 6432259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 228 - 340
Target Start/End: Original strand, 7119269 - 7119381
Alignment:
Q  228 tcttgaaaagtgggccaaattcaaatgtctaatcttagaacat---cttaaaaattgacaaataccttcttcagatatgttatagcaatagctcaaatca 324  Q
    ||||||| ||||||| || ||||||||| ||||||||||||||   ||||||| |||||||||||   ||||||||||||||| ||||    ||||||||    
T  7119269 tcttgaacagtgggctaagttcaaatgtttaatcttagaacatctccttaaaacttgacaaatac---cttcagatatgttattgcaagtattcaaatca 7119365  T
Q  325 agtagttgcaaattgg 340  Q
    || ||||| |||||||    
T  7119366 agaagttgtaaattgg 7119381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 228 - 340
Target Start/End: Original strand, 7131747 - 7131859
Alignment:
Q  228 tcttgaaaagtgggccaaattcaaatgtctaatcttagaacat---cttaaaaattgacaaataccttcttcagatatgttatagcaatagctcaaatca 324  Q
    ||||||| ||||||| || ||||||||| ||||||||||||||   ||||||| |||||||||||   ||||||||||||||| ||||    ||||||||    
T  7131747 tcttgaacagtgggctaagttcaaatgtttaatcttagaacatctccttaaaacttgacaaatac---cttcagatatgttattgcaagtattcaaatca 7131843  T
Q  325 agtagttgcaaattgg 340  Q
    || ||||| |||||||    
T  7131844 agaagttgtaaattgg 7131859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 145 - 198
Target Start/End: Original strand, 28935078 - 28935131
Alignment:
Q  145 agtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttggga 198  Q
    ||||||||||| |||| ||||||||||||||||||||||||||| |||| ||||    
T  28935078 agtgcttcatcgtcaactcttgtatgtgacaagttcaacacctcgagttgggga 28935131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 131 - 214
Target Start/End: Original strand, 6410021 - 6410104
Alignment:
Q  131 ttgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttgggagatttaaagttcattc 214  Q
    |||||||||||||||| | |||||||||||  ||||||| |||| ||||||||||||  || ||||||  || |||||||||||    
T  6410021 ttgagatcacataaagagtttcatcatcaacgcttgtatttgactagttcaacaccttcagcttgggaacttcaaagttcattc 6410104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 131 - 188
Target Start/End: Original strand, 6394879 - 6394936
Alignment:
Q  131 ttgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctc 188  Q
    ||||||||||| |||| | |||||||||||  ||||||| ||||||||||||||||||    
T  6394879 ttgagatcacagaaagagtttcatcatcaacgcttgtatttgacaagttcaacacctc 6394936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 198
Target Start/End: Original strand, 6402850 - 6402942
Alignment:
Q  106 agtttcaaaagcccatgaaaacttattgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttggga 198  Q
    |||||||||||||||  | || |  ||||||||||||| |||| |||||||||||   | |||| ||||||||||||||| ||||||| ||||    
T  6402850 agtttcaaaagcccactacaattctttgagatcacatagagtgtttcatcatcaaccttcgtatctgacaagttcaacacttctagttgggga 6402942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 131 - 211
Target Start/End: Original strand, 12102281 - 12102361
Alignment:
Q  131 ttgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttgggagatttaaagttca 211  Q
    |||| |||| ||| ||| |||| | ||||| || |||||||||||||||||||||||| |||||||||  || ||||||||    
T  12102281 ttgaaatcagatagagttcttcgttatcaactcatgtatgtgacaagttcaacacctccagtttgggaacttcaaagttca 12102361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 188
Target Start/End: Complemental strand, 6585321 - 6585264
Alignment:
Q  131 ttgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctc 188  Q
    ||||||||||||| |||| |||||||||||   |||||| |||||||||||| |||||    
T  6585321 ttgagatcacatagagtgtttcatcatcaacctttgtatctgacaagttcaatacctc 6585264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 131 - 191
Target Start/End: Complemental strand, 7994266 - 7994206
Alignment:
Q  131 ttgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctctag 191  Q
    ||||||||||||| |||| ||| |||| ||  ||||||| ||||| |||||||||||||||    
T  7994266 ttgagatcacatatagtgtttcgtcattaacccttgtatttgacatgttcaacacctctag 7994206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 131 - 198
Target Start/End: Complemental strand, 19468583 - 19468516
Alignment:
Q  131 ttgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttggga 198  Q
    |||||||||||||||||| |||||||||||   |||||| |||||| ||||||||||| || ||||||    
T  19468583 ttgagatcacataaagtgtttcatcatcaacctttgtatctgacaacttcaacacctccagcttggga 19468516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 247 - 340
Target Start/End: Original strand, 9581199 - 9581295
Alignment:
Q  247 ttcaaatgtctaatcttagaacatctt---aaaaattgacaaataccttcttcagatatgttatagcaatagctcaaatcaagtagttgcaaattgg 340  Q
    |||||||||||||||| | ||||||||   |||| |||||||||||||  || |||||||||| |||||| || || |||||| || ||||||||||    
T  9581199 ttcaaatgtctaatctgacaacatctttttaaaacttgacaaatacctcttttagatatgttacagcaatggcgcagatcaagcagctgcaaattgg 9581295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 247 - 340
Target Start/End: Original strand, 9586767 - 9586863
Alignment:
Q  247 ttcaaatgtctaatcttagaacatctt---aaaaattgacaaataccttcttcagatatgttatagcaatagctcaaatcaagtagttgcaaattgg 340  Q
    |||||||||||||||| | ||||||||   |||| |||||||||||||  || |||||||||| |||||| || || |||||| || ||||||||||    
T  9586767 ttcaaatgtctaatctgacaacatctttgtaaaacttgacaaatacctcttttagatatgttacagcaatggcacagatcaagcagctgcaaattgg 9586863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 131 - 213
Target Start/End: Original strand, 52082596 - 52082678
Alignment:
Q  131 ttgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttgggagatttaaagttcatt 213  Q
    ||||||||||||| | || ||||||||||||| |||| | |||||||||||||||||| | ||||| |  || ||||||||||    
T  52082596 ttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcatt 52082678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 130 - 197
Target Start/End: Original strand, 9586653 - 9586720
Alignment:
Q  130 attgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttggg 197  Q
    |||||| |||||||||||| |||||||| ||    ||||| ||||||||||||||||||||| |||||    
T  9586653 attgaggtcacataaagtgtttcatcattaacatctgtatatgacaagttcaacacctctagcttggg 9586720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 197
Target Start/End: Original strand, 9581084 - 9581152
Alignment:
Q  131 ttgagatcacataaagtgcttcatcatcaa--ttcttgtatgtgacaagttcaacacctctagtttggg 197  Q
    |||||||||||||||| | |||||||| ||  || |||||  ||||||||||||||||||||| |||||    
T  9581084 ttgagatcacataaagcgtttcatcattaacttttttgtacatgacaagttcaacacctctagcttggg 9581152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 209
Target Start/End: Complemental strand, 18724440 - 18724358
Alignment:
Q  131 ttgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagtt----caacacctctagtttgggagatttaaagtt 209  Q
    |||||||| |||| ||| ||| ||||||||||||||  |||||||||||    ||||||||||||||||| || || ||||||    
T  18724440 ttgagatcgcatacagtactttatcatcaattcttgagtgtgacaagttcaaccaacacctctagtttggaagcttcaaagtt 18724358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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