View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11630_low_4 (Length: 375)
Name: NF11630_low_4
Description: NF11630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11630_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 250; Significance: 1e-139; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 19 - 365
Target Start/End: Complemental strand, 7565560 - 7565223
Alignment:
| Q |
19 |
gtaagtccttgaattcaataatttccgatcctaaattcgctaaagatcaccttagcttgtcacaaacccgccattaccacctcctcagatgcccgcggag |
118 |
Q |
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| T |
7565560 |
gtaagtccttgaattcaataatttccgatcctaaattcgctaaagatcaccttcgcttgtcacaaacccgccattaccacctcctcagatgcccgtggaa |
7565461 |
T |
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| Q |
119 |
tatgtttatgtttttaagaaggaagttcactctctccgatttccaacttccctctattttaagcaactcacctagcaccatcccagagacaaagattaag |
218 |
Q |
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| T |
7565460 |
tatgttt------ttaagaaggaagttcagtctctccgatttccaacttcgctctattttaagcaactcacctagcaccatc---gagacaaagattaag |
7565370 |
T |
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| Q |
219 |
ttccctttaaagactcgtgagattcatgctcaggtgattgactcttgcgatggcatcatctttttcagagtggaatgcgattaccaacatcgtagtatgg |
318 |
Q |
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| T |
7565369 |
ttccctttaaacactcgtgacattcatgctcacgtgattgactcttgcgatggcatcatctttttcagagtgcaatacaattacaaacattgtaatatgg |
7565270 |
T |
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| Q |
319 |
tagcatggaacctttgtaccagaaaattgaagacattgccacctttg |
365 |
Q |
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| T |
7565269 |
tagcatggaacccttgtaccagaaaattgaagacattgccacctttg |
7565223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 25 - 113
Target Start/End: Complemental strand, 371594 - 371506
Alignment:
| Q |
25 |
ccttgaattcaataatttccgatcctaaattcgctaaagatcaccttagcttgtcacaaacccgccattaccacctcctcagatgcccg |
113 |
Q |
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| T |
371594 |
ccttgaattccattatttccgatcctaaattcgccaaagatcactttcgcttgtcaaagacccgtcattaccacctcctcatatgcccg |
371506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 25 - 113
Target Start/End: Complemental strand, 1460338 - 1460250
Alignment:
| Q |
25 |
ccttgaattcaataatttccgatcctaaattcgctaaagatcaccttagcttgtcacaaacccgccattaccacctcctcagatgcccg |
113 |
Q |
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| T |
1460338 |
ccttgaattctttaatttctgatcctaaattttccaaagatcaccttcgcttgtcacagacccgccataacaacctcctcgtatgcccg |
1460250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 101
Target Start/End: Complemental strand, 1442907 - 1442832
Alignment:
| Q |
26 |
cttgaattcaataatttccgatcctaaattcgctaaagatcaccttagcttgtcacaaacccgccattaccacctc |
101 |
Q |
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| T |
1442907 |
cttgatttccattatttctgatcctaacttcaccaaagatcaccttcgcttgtcacggacccgccattaccacctc |
1442832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 284
Target Start/End: Complemental strand, 1442681 - 1442652
Alignment:
| Q |
255 |
attgactcttgcgatggcatcatctttttc |
284 |
Q |
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| T |
1442681 |
attgactcttgcgatggcatcatctttttc |
1442652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 37 - 113
Target Start/End: Complemental strand, 1471714 - 1471638
Alignment:
| Q |
37 |
taatttccgatcctaaattcgctaaagatcaccttagcttgtcacaaacccgccattaccacctcctcagatgcccg |
113 |
Q |
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||||||| ||||| ||||| || |||| ||||||| |||||| ||| ||||| ||| ||||||||||| ||||||| |
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| T |
1471714 |
taatttctgatcccaaatttgccaaaggtcaccttcgcttgttacacacccgtcataaccacctcctcgtatgcccg |
1471638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 105
Target Start/End: Original strand, 3926327 - 3926411
Alignment:
| Q |
21 |
aagtccttgaattcaataatttccgatcctaaattcgctaaagatcaccttagcttgtcacaaacccgccattaccacctcctca |
105 |
Q |
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| T |
3926327 |
aagtccttgaattcattaatttctgatcccaaattcgtcaaacatcaccttcacttgtcacagactagaccttaccacctcctca |
3926411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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