View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11630_low_9 (Length: 309)
Name: NF11630_low_9
Description: NF11630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11630_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 34748700 - 34748834
Alignment:
| Q |
1 |
agatctataattttattttgaatttccaaattttcagaaaagaatgtacctttgcatatgcatactatatatgcatctaaaaagcaactcaatctgctag |
100 |
Q |
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| T |
34748700 |
agatctataattttattttgaatttccaaattttcagaaaagaatgtacctttgcatatgcatactatatatgcatctaaaaagcaactcaatctgctag |
34748799 |
T |
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| Q |
101 |
tttcatctattatagtaactaacatagcatagcat |
135 |
Q |
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| T |
34748800 |
tttcatctattatagtaactaacatagcatagcat |
34748834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 164 - 292
Target Start/End: Original strand, 34748863 - 34748991
Alignment:
| Q |
164 |
gcttctctgtctcacattagaagtgtgatcttcattgtactaaataaaaatatgtagaaggggcactgaaagctaggaacttcaaaagccttgtagtaaa |
263 |
Q |
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| T |
34748863 |
gcttctctgtctcacattagaagtgtgatcttcattgtactaaataaaaatatgtagaaggggcactgaaagctaggaacttcaaaagccttgtagtaaa |
34748962 |
T |
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| Q |
264 |
gtcagataaagcattttacaaccatatgc |
292 |
Q |
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| T |
34748963 |
gtcagataaagcattttacaaccatatgc |
34748991 |
T |
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