View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11631_low_2 (Length: 408)
Name: NF11631_low_2
Description: NF11631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11631_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 1 - 391
Target Start/End: Complemental strand, 4273532 - 4273142
Alignment:
| Q |
1 |
ccacaaaagataaaattagcctccttgtcagttttttagaagttttctcagttaacttatatataaactcgataagtttgtgtttagactcggagattct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4273532 |
ccacaaaagataaaattagcctccttgtcagttttttagaagttttctcagttaacttatatataaactcgataagtttgtgtttagactcggagattct |
4273433 |
T |
|
| Q |
101 |
taaacctggtataagtgcttaggatccattgtattcttaatcacgttatccacaatgtttggaagcttggatctgtctgtgagctgtggcatggcctgca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4273432 |
taaacctggtataagtgcttaggatccattgtattcttaatcacattatccacaatgtttggaagcttggatctgtctgtgagctgtggcatggcctgca |
4273333 |
T |
|
| Q |
201 |
attagaagaaaaatagctcattatcattcatttatcatatcaaccatatctaataatatgtttgttcggcattcatctattctttcttgcgtttcaagtc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
4273332 |
attagaagaaaaatagctcattatcattcatttatcatatcaaccatatctaataatatgtttgttcggcattcatctattctttcttgtgtttcaagtc |
4273233 |
T |
|
| Q |
301 |
agtttcaacgtgaatattgagaagctacaaagtggacacacgccgtcaatacaaacatatactaatcagatcaaacaacacatacccatgt |
391 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4273232 |
agtttcaacgtgaatattgagaagctacaaagtggacacacgccgtcaaaacaaacatatactaatcagatcaaacaacacatacccatgt |
4273142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 391
Target Start/End: Complemental strand, 2809630 - 2809225
Alignment:
| Q |
1 |
ccacaaaagataaaattagcctccttgtc--agttttttagaagttttctcagttaacttatatataaactcgataagtttgtgtttagactcggagatt |
98 |
Q |
| |
|
||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2809630 |
ccacaaaagttaaaattagcctccttgtctcagttttttagaagttttctcagttaaattaaatataaactcgataagtttgtgtttagactcggagatt |
2809531 |
T |
|
| Q |
99 |
cttaaacctggtataagtgcttaggatccattgtattcttaatcacgttatccacaatgtttggaagcttggatctgtctgtgagctgtggcatggcctg |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2809530 |
cttaaacctggtataagtgcttaggatccattgtattcttaatcacattatccacaatgtttggaagcttggatctgtctgtgagctgtggcatggcctg |
2809431 |
T |
|
| Q |
199 |
caattagaagaaaaatagctcattatcattcatttatcatatcaaccatatctaataatatgtttgttcggcattcatctattctttcttgcgtttcaag |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2809430 |
caattagaagaaaaatagctcattatcattcatttatcatatcaaccatatctaataatatgtttgttcggcattcatctattctttcttgcgtttcaag |
2809331 |
T |
|
| Q |
299 |
tcagtttcaacgtgaatattgagaagcta-------------caaagtggacacacgccgtcaatacaaacatatactaatcagatcaaacaacacatac |
385 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
2809330 |
tcagtttcaacgtgaatattgagaagctacaaattgttggttcaaagtggacacacgccgtcaaaacaaacatatactaatctgatcaaacaacacatac |
2809231 |
T |
|
| Q |
386 |
ccatgt |
391 |
Q |
| |
|
|||||| |
|
|
| T |
2809230 |
ccatgt |
2809225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 102 - 200
Target Start/End: Original strand, 49121313 - 49121411
Alignment:
| Q |
102 |
aaacctggtataagtgcttaggatccattgtattcttaatcacgttatccacaatgtttggaagcttggatctgtctgtgagctgtggcatggcctgca |
200 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| || || |||||||||||||||||| ||||| |||||||||||||| ||||||||||||| |
|
|
| T |
49121313 |
aaacctggtataagtgcttgagatccattgtattctttatgactggatccacaatgtttggaagtttggacctgtctgtgagctgaggcatggcctgca |
49121411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University