View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11631_low_3 (Length: 244)
Name: NF11631_low_3
Description: NF11631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11631_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 4273543 - 4273778
Alignment:
| Q |
1 |
tttaacaatactattatcacaagattttttaaatactgtctttttagttannnnnnnnnaagaaacttgttcaaataggctcataagcctaaaaccaggt |
100 |
Q |
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| T |
4273543 |
tttaacaatactattatcacaagattttttaaatactgtctttttagttatttttttttaagaaacttgttcaaataggctcataaacctaaaaccaggt |
4273642 |
T |
|
| Q |
101 |
tcctgctggagttatcgttgctctacatcttcaattttttgcagcattctgcttaactaccacatggaatttgtgtactttataggttgctgctgtggct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4273643 |
tcctgctggagttatcgttgctctacatcttcaattttttgcagcattctgcttaactaccacatggaatttgtgtactttataggttgctgctgtggct |
4273742 |
T |
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| Q |
201 |
gtattatgtgtgcaaccagagccgtgttaccgccct |
236 |
Q |
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|||||||||||||||||||||||||| ||||||||| |
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| T |
4273743 |
gtattatgtgtgcaaccagagccgtgctaccgccct |
4273778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 2809641 - 2809876
Alignment:
| Q |
1 |
tttaacaatactattatcacaagattttttaaatactgtctttttagttannnnnnnnnaagaaacttgttcaaataggctcataagcctaaaaccaggt |
100 |
Q |
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|
|||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
2809641 |
tttaacaatactgttatcacaagattttttaaatactgcctttttagttttttttttttaagaaacttgttcaaataggctcataagcctaaaaccaggt |
2809740 |
T |
|
| Q |
101 |
tcctgctggagttatcgttgctctacatcttcaattttttgcagcattctgcttaactaccacatggaatttgtgtactttataggttgctgctgtggct |
200 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2809741 |
tcctggtggagttatcgttgctctacatcttcaattttttgcagcattctgcttaactaccacatggaatttgtgtactttataggttgctgctgtggct |
2809840 |
T |
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| Q |
201 |
gtattatgtgtgcaaccagagccgtgttaccgccct |
236 |
Q |
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|||||||||||||||||||||||||| ||||||||| |
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| T |
2809841 |
gtattatgtgtgcaaccagagccgtgataccgccct |
2809876 |
T |
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