View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11632_high_1 (Length: 481)
Name: NF11632_high_1
Description: NF11632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11632_high_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 412; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 1 - 464
Target Start/End: Original strand, 39521391 - 39521854
Alignment:
| Q |
1 |
tttggtccccgccgtaaagagggtgtttgttttccaacgatggttgggagtgaaaaccgccactataagtagttaagccccgaccattagaaccgatgta |
100 |
Q |
| |
|
||||||| ||| ||| |||| || ||||| ||||||||||| |||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
39521391 |
tttggtcaccgacgttaagacggagtttggtttccaacgatcgttgtgagtgtaaaccgccactataagtagttaagccccgaccagtagaaccgatgta |
39521490 |
T |
|
| Q |
101 |
attgaaacgtgctactgaatcggggattaaatgaagagggagcataaagagttcaattgcattaacaaacgcaaatgatgatgtttgaggtgtgaaagtg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39521491 |
attgaaacgtgctactgaatcggggattaaatgaagagggagcataaagagttcaattgcattaacaaacgcaaatgatgatgtttgaggtgtgaaagtg |
39521590 |
T |
|
| Q |
201 |
attgtgaatctttttctgatgattttaacgtaatactcttttactaaaggagagttggtggtgttttcagcgttgaaattatgtaacagaatgaaaccag |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
39521591 |
attgtgaatctttttctgatgattttaacgtaatactcttttactaaaggagagttggtggtgttttcagcgttgaaattatgtaacagaaggaaaccag |
39521690 |
T |
|
| Q |
301 |
gaactgaaacggtgaattttgcagaggaaaggttagttggtgaagagaatgaaaagaaatgaaaacgtaccatgtaagtgttgtttggaacggttttgaa |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
39521691 |
gaactgaaacggtgaattttgcagaggaaaggttagttggtgaagagaatgaaaagaaatggaaacgtaccatgtaagtgttgcttggaacggttttgaa |
39521790 |
T |
|
| Q |
401 |
ttcataggaagaattggaaaggaaaattcttgctgtttggttgagaggtgaagacactggtgat |
464 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39521791 |
ttcataggaagaattggaaaggaaaattcttgctgtttggttgagaggtgaagacactggtgat |
39521854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 96 - 464
Target Start/End: Original strand, 39544279 - 39544647
Alignment:
| Q |
96 |
atgtaattgaaacgtgctactgaatcggggattaaatgaagagggagcataaagagttcaattgcattaacaaacgcaaatgatgatgtttgaggtgtga |
195 |
Q |
| |
|
|||||||||||||| |||| ||||| ||| ||||||||||||||||| ||||||||||||| |||||||| |||||||||||| |||||||||||||||| |
|
|
| T |
39544279 |
atgtaattgaaacgagctattgaattgggtattaaatgaagagggagaataaagagttcaaatgcattaaaaaacgcaaatgaagatgtttgaggtgtga |
39544378 |
T |
|
| Q |
196 |
aagtgattgtgaatctttttctgatgattttaacgtaatactcttttactaaaggagagttggtggtgttttcagcgttgaaattatgtaacagaatgaa |
295 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
39544379 |
aagtgattgtgaatctttttctgatgattttaacgtaatactcttttactaaagaagagttggtggtgttttcagagttgaaattttgtaacagaatgaa |
39544478 |
T |
|
| Q |
296 |
accaggaactgaaacggtgaattttgcagaggaaaggttagttggtgaagagaatgaaaagaaatgaaaacgtaccatgtaagtgttgtttggaacggtt |
395 |
Q |
| |
|
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||| | ||| |
|
|
| T |
39544479 |
accagggactgaaacattgaattttgcagaggaaaggttagttggtgaagagaatgaaaagaaatggaaacataccatgtaggtgttgtttggtatggta |
39544578 |
T |
|
| Q |
396 |
ttgaattcataggaagaattggaaaggaaaattcttgctgtttggttgagaggtgaagacactggtgat |
464 |
Q |
| |
|
|||||||||||||| | |||| |||| || ||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
39544579 |
gaaaattcataggaagactcggaatggaatatccttgctgtttggtagagaggtgaaaacactggtgat |
39544647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 116 - 465
Target Start/End: Original strand, 39576151 - 39576500
Alignment:
| Q |
116 |
tgaatcggggattaaatgaagagggagcataaagagttcaattgcattaacaaacgcaaatgatgatgtttgaggtgtgaaagtgattgtgaatcttttt |
215 |
Q |
| |
|
|||||| ||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
39576151 |
tgaatcagggattaaatgaaccggaagcataaagagttctattgcattaacaaacgcaaatgatgatgtttgaggtgtgaatatgattttgaatcttttt |
39576250 |
T |
|
| Q |
216 |
ctgatgattttaacgtaatactcttttactaaaggagagttggtggtgttttcagcgttgaaattatgtaacagaatgaaaccaggaactgaaacggtga |
315 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |||| | ||| |
|
|
| T |
39576251 |
ctaatgattttaacgtaatactcttttactaaagcagatttggtggtgttttcagcgttgaaattatgtaacagaaggaaaccaggaacggaaatgttga |
39576350 |
T |
|
| Q |
316 |
attttgcagaggaaaggttagttggtgaagagaatgaaaagaaatgaaaacgtaccatgtaagtgttgtttggaacggttttgaattcataggaagaatt |
415 |
Q |
| |
|
||||||||| |||||| ||||||||||||||||||||||||||| | ||||||||||| |||||||||||||| | ||| ||||| ||||| || | |
|
|
| T |
39576351 |
attttgcagtggaaagtttagttggtgaagagaatgaaaagaaacggaaacgtaccatataagtgttgtttggtatggtagaaaattcgtaggaggattc |
39576450 |
T |
|
| Q |
416 |
ggaaaggaaaattcttgctgtttggttgagaggtgaagacactggtgatg |
465 |
Q |
| |
|
||| ||||||||||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
39576451 |
agaatggaaaattcttgctgtttggtaaagaggtgaagacactgatgatg |
39576500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 120 - 464
Target Start/End: Original strand, 39525007 - 39525351
Alignment:
| Q |
120 |
tcggggattaaatgaagagggagcataaagagttcaattgcattaacaaacgcaaatgatgatgtttgaggtgtgaaagtgattgtgaatctttttctga |
219 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| ||||||||| |||| |||||||||| | ||||||||||||| |||||| ||||| ||||||||| |
|
|
| T |
39525007 |
tcggggattaaatgaacagggagcataaagagttctattgcattagcaaaggcaaatgatgctttttgaggtgtgaacgtgattttgaatttttttctga |
39525106 |
T |
|
| Q |
220 |
tgattttaacgtaatactcttttactaaaggagagttggtggtgttttcagcgttgaaattatgtaacagaatgaaaccaggaactgaaacggtgaattt |
319 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||| || | |||||| |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
39525107 |
tgattttaaggtaatactcttttactaaaggagagttggtggtgttttttgcatcgaaattttgtaacagaatgaaaccagggactgaaacggtgaattt |
39525206 |
T |
|
| Q |
320 |
tgcagaggaaaggttagttggtgaagagaatgaaaagaaatgaaaacgtaccatgtaagtgttgtttggaacggttttgaattcataggaagaattggaa |
419 |
Q |
| |
|
||||| |||||||||| |||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||| || || |||| | |||| |
|
|
| T |
39525207 |
tgcagtggaaaggttaagtggtgaagagaatgaaaagaaatggaaacgtaccatgtaggtgttgtttggtacggttttgaactcgtataaagattcggaa |
39525306 |
T |
|
| Q |
420 |
aggaaaattcttgctgtttggttgagaggtgaagacactggtgat |
464 |
Q |
| |
|
| || || ||||||||||||| ||||||||||| ||||| |||| |
|
|
| T |
39525307 |
tgaaatatccttgctgtttggtagagaggtgaaggcactgatgat |
39525351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 114 - 453
Target Start/End: Original strand, 39511258 - 39511597
Alignment:
| Q |
114 |
actgaatcggggattaaatgaagagggagcataaagagttcaattgcattaacaaacgcaaatgatgatgtttgaggtgtgaaagtgattgtgaatcttt |
213 |
Q |
| |
|
|||||||| ||||||||||||| ||||||| ||||||||| ||||| |||||||| || | ||||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
39511258 |
actgaatcagggattaaatgaacggggagcacaaagagttctattgcgttaacaaatgcgagtgatgatttttgaggtgtgaaagtgattttgaatcttt |
39511357 |
T |
|
| Q |
214 |
ttctgatgattttaacgtaatactcttttactaaaggagagttggtggtgttttcagcgttgaaattatgtaacagaatgaaaccaggaactgaaacggt |
313 |
Q |
| |
|
|||||||||||| |||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |
|
|
| T |
39511358 |
ttctgatgatttgaacgtagtattcttttactaaaggagagttggtggtgttttcagcgttgaaattttgtaacagaatgaaaccaggaactgaaacagt |
39511457 |
T |
|
| Q |
314 |
gaattttgcagaggaaaggttagttggtgaagagaatgaaaagaaatgaaaacgtaccatgtaagtgttgtttggaacggttttgaattcataggaagaa |
413 |
Q |
| |
|
||||||||||| |||||| |||||||||| ||||||||||| |||||| ||||||||||| || ||||||||||| | |||||||||||| || |||| |
|
|
| T |
39511458 |
gaattttgcagtggaaagtttagttggtgtagagaatgaaaggaaatggaaacgtaccatataggtgttgtttgggatggttttgaattcgtaccaagat |
39511557 |
T |
|
| Q |
414 |
ttggaaaggaaaattcttgctgtttggttgagaggtgaag |
453 |
Q |
| |
|
| |||| ||||||| ||||| ||||||| ||||| ||||| |
|
|
| T |
39511558 |
tcggaacggaaaatccttgcagtttggtagagagatgaag |
39511597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 54 - 452
Target Start/End: Original strand, 39580629 - 39581016
Alignment:
| Q |
54 |
aaaccgccactataagtagttaagccccgaccattagaaccgatgtaattgaaacgtgctactgaatcggggattaaatgaagagggagcataaagagtt |
153 |
Q |
| |
|
||||||||| | |||| || |||||| ||||| ||||| |||||||||||| ||| ||||| |||||||| |||||| ||||| |||||||||| |
|
|
| T |
39580629 |
aaaccgccagtgtaagaagataagccttgaccagtagaattaatgtaattgaaatgtgtgactgattcggggatgaaatgagtggggagtataaagagtt |
39580728 |
T |
|
| Q |
154 |
caattgcattaacaaacgcaaatgatgatgtttgaggtgtgaaagtgattgtgaatctttttctgatgattttaacgtaatactcttttact-aaaggag |
252 |
Q |
| |
|
| |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| | | ||||||||| | |||| ||||| | | |||| | |
|
|
| T |
39580729 |
ccattgcattaacaaacgcaaatgatgaggtttgaggtgtgaaagtgattttgaatcttttacgggtgattttaaagaaatattctttaattgaaagcgg |
39580828 |
T |
|
| Q |
253 |
agttggtggtgttttcagcgttgaaattatgtaacagaatgaaaccaggaactgaaacggtgaattttgcagaggaaaggttagttggtgaagagaatga |
352 |
Q |
| |
|
|||| | ||| ||||| ||||||||| |||||| |||| |||||| |||||||||||| |||||| ||||||||| |||||||| |
|
|
| T |
39580829 |
agtttata------tca------aaattttgtaacagagagaaacctggaaaggaaacgttgaattttgcagtggaaagattagttggtaaagagaatag |
39580916 |
T |
|
| Q |
353 |
aaagaaatgaaaacgtaccatgtaagtgttgtttggaacggttttgaattcataggaagaattggaaaggaaaattcttgctgtttggttgagaggtgaa |
452 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| |||||||||||||| ||| |||| |||||| |||| || |||||||||||| |||||||||| |
|
|
| T |
39580917 |
aaagaaatggaaacgtaccatgtaagtgttgtttggtacggttttgaattcgtagaaagatttggaagggaatataattgctgtttggtagagaggtgaa |
39581016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 117; Significance: 2e-59; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 200 - 388
Target Start/End: Complemental strand, 3331696 - 3331509
Alignment:
| Q |
200 |
gattgtgaatctttttctgatgattttaacgtaatactcttttactaaaggagagttggtggtgttttcagcgttgaaattatgtaacagaatgaaacca |
299 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||| |||||| |
|
|
| T |
3331696 |
gattgtgaatctttttatgatgattttaacgtaatactcttttactaaaggagagttggtggtgtttttagcgtcgaaattagttaacagaaggaaaccg |
3331597 |
T |
|
| Q |
300 |
ggaactgaaacggtgaattttgcagaggaaaggttagttggtgaagagaatgaaaagaaatgaaaacgtaccatgtaagtgttgtttgg |
388 |
Q |
| |
|
| ||| |||| | |||| ||||||| |||||||||| |||||||||||||||||| |||||| |||||||||||||| ||||||||||| |
|
|
| T |
3331596 |
gaaacagaaatgttgaa-tttgcagtggaaaggttaattggtgaagagaatgaaaggaaatggaaacgtaccatgtaggtgttgtttgg |
3331509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 156 - 200
Target Start/End: Complemental strand, 3331315 - 3331271
Alignment:
| Q |
156 |
attgcattaacaaacgcaaatgatgatgtttgaggtgtgaaagtg |
200 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
3331315 |
attgcattaacaaatgcaaatgatgatgtttgaggtgtgaaagtg |
3331271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University