View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11632_high_4 (Length: 349)
Name: NF11632_high_4
Description: NF11632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11632_high_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 334; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 342
Target Start/End: Original strand, 42055720 - 42056061
Alignment:
| Q |
1 |
cagatgatgacacagaagtggatgattctccaatagagcaggtcagactaacagtgtcaacaacagacgatccaacacaaccagcactgacatttaggac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
42055720 |
cagatgatgacacagaagtggatgattctccaatagagcaggtcagactaacagtgtcaacaacagacgacccaacacaaccagcactgacatttaggac |
42055819 |
T |
|
| Q |
101 |
atggattattggtttggcatgttgcattgtccttgcctttgtgaaccaattctttgggtacagaaccaaccctctgactatcactgctgtctcagcacag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42055820 |
atggattattggtttggcatgttgcattgtccttgcctttgtgaaccaattctttgggtacagaaccaaccctctgactatcactgctgtctcagcacag |
42055919 |
T |
|
| Q |
201 |
attgtttctctcccaattggaaaactaatggctgcaacacttccaacaacaatatataaagttcccttcactaaatggtctttcacattgaatcctggac |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42055920 |
attgtttctctcccaattggaaaactaatggctgcaacacttccaacaacaatatataaagttcccttcactaaatggtctttcacattgaatcctggac |
42056019 |
T |
|
| Q |
301 |
cattcaatttgaaggaacatgccctcattaccatctctgcta |
342 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
42056020 |
cattcaatttgaaggaacatgccctcattaccatctttgcta |
42056061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 336
Target Start/End: Original strand, 42080870 - 42081205
Alignment:
| Q |
1 |
cagatgatgacacagaagtggatgattctccaatagagcaggtcagactaacagtgtcaacaacagacgatccaacacaaccagcactgacatttaggac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
42080870 |
cagatgatgacacagaagtggatgattctccaatagagcaggtcagactaacagtgtcaacaacagacgacccaacacaaccagcactgacatttaggac |
42080969 |
T |
|
| Q |
101 |
atggattattggtttggcatgttgcattgtccttgcctttgtgaaccaattctttgggtacagaaccaaccctctgactatcactgctgtctcagcacag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42080970 |
atggattattggtttggcatgttgcattgtccttgcctttgtgaaccaattctttgggtacagaaccaaccctctgactatcactgctgtctcagcacag |
42081069 |
T |
|
| Q |
201 |
attgtttctctcccaattggaaaactaatggctgcaacacttccaacaacaatatataaagttcccttcactaaatggtctttcacattgaatcctggac |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42081070 |
attgtttctctcccaattggaaaactaatggctgcaacacttccaacaacaatatataaagttcccttcactaaatggtctttcacattgaatcctggac |
42081169 |
T |
|
| Q |
301 |
cattcaatttgaaggaacatgccctcattaccatct |
336 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
42081170 |
cattcaatttgaaggaacatgccctcattaccatct |
42081205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 1 - 342
Target Start/End: Original strand, 42071922 - 42072263
Alignment:
| Q |
1 |
cagatgatgacacagaagtggatgattctccaatagagcaggtcagactaacagtgtcaacaacagacgatccaacacaaccagcactgacatttaggac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| ||||||||| || |||||||||||||| ||||||||||| |
|
|
| T |
42071922 |
cagatgatgacacagaagtggatgattctcctatagagcaagtcagactaacagtgtcaataacagacgaccctacacaaccagcactaacatttaggac |
42072021 |
T |
|
| Q |
101 |
atggattattggtttggcatgttgcattgtccttgcctttgtgaaccaattctttgggtacagaaccaaccctctgactatcactgctgtctcagcacag |
200 |
Q |
| |
|
|||| |||||||||| | | |||||||| ||||||||||||||||||||||||||| | |||||||||||||||| |||| ||| |||||||||||||| |
|
|
| T |
42072022 |
atgggttattggttttgtgtcttgcattgcccttgcctttgtgaaccaattctttggattcagaaccaaccctctgtctattacttctgtctcagcacag |
42072121 |
T |
|
| Q |
201 |
attgtttctctcccaattggaaaactaatggctgcaacacttccaacaacaatatataaagttcccttcactaaatggtctttcacattgaatcctggac |
300 |
Q |
| |
|
||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42072122 |
attattgctctcccagttggaaaactaatggctgcaacacttccaacaacaatatataaagttcccttcactaaatggtctttcacattgaatcctggac |
42072221 |
T |
|
| Q |
301 |
cattcaatttgaaggaacatgccctcattaccatctctgcta |
342 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
42072222 |
cattcaatttgaaggaacatgccctcattaccatctttgcta |
42072263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 9e-18; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 130 - 244
Target Start/End: Complemental strand, 36537594 - 36537480
Alignment:
| Q |
130 |
tccttgcctttgtgaaccaattctttgggtacagaaccaaccctctgactatcactgctgtctcagcacagattgtttctctcccaattggaaaactaat |
229 |
Q |
| |
|
||||||| ||| |||||||||| || || |||| |||||||||| ||| |||||| |||||||||| |||||| || | |||||| |||| ||||| || |
|
|
| T |
36537594 |
tccttgcatttatgaaccaatttttaggatacaaaaccaaccctttgaaaatcacttctgtctcagctcagattattaccctcccacttgggaaacttat |
36537495 |
T |
|
| Q |
230 |
ggctgcaacacttcc |
244 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
36537494 |
ggctgcaacacttcc |
36537480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 130 - 249
Target Start/End: Complemental strand, 36531982 - 36531863
Alignment:
| Q |
130 |
tccttgcctttgtgaaccaattctttgggtacagaaccaaccctctgactatcactgctgtctcagcacagattgtttctctcccaattggaaaactaat |
229 |
Q |
| |
|
||||||| ||||||||||| || || || ||||||||||||||| ||| |||||| ||||||| || |||||| || | || ||| |||| ||||| || |
|
|
| T |
36531982 |
tccttgcatttgtgaaccagtttttaggctacagaaccaaccctttgaaaatcacttctgtctcggctcagattattgccctgccacttgggaaacttat |
36531883 |
T |
|
| Q |
230 |
ggctgcaacacttccaacaa |
249 |
Q |
| |
|
||||||||||||||| |||| |
|
|
| T |
36531882 |
ggctgcaacacttcccacaa |
36531863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 130 - 249
Target Start/End: Complemental strand, 36525149 - 36525030
Alignment:
| Q |
130 |
tccttgcctttgtgaaccaattctttgggtacagaaccaaccctctgactatcactgctgtctcagcacagattgtttctctcccaattggaaaactaat |
229 |
Q |
| |
|
||||||| ||||||||||| ||||| || ||||||||||||||| ||| |||||| |||| ||||| ||||| | | |||||| |||||| || || |
|
|
| T |
36525149 |
tccttgcatttgtgaaccagttcttaggctacagaaccaaccctttgagaatcacttctgtttcagctcagatcatcacactcccacttggaaggcttat |
36525050 |
T |
|
| Q |
230 |
ggctgcaacacttccaacaa |
249 |
Q |
| |
|
||||||||||||||| |||| |
|
|
| T |
36525049 |
ggctgcaacacttcccacaa |
36525030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University