View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11632_low_3 (Length: 438)
Name: NF11632_low_3
Description: NF11632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11632_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 18 - 426
Target Start/End: Original strand, 2625456 - 2625848
Alignment:
| Q |
18 |
taaaactcatcaaatatgacttcaaacattactaaattatcattgtgtgatatagatttaaatattgaatttacacctttgccagatcttaatattgatg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
2625456 |
taaaactcatcaaatatgacttcaaacattacaaaattttcattgtgtgatatagatttaaatgttgaatttacacctttgccagatcttaatattgatg |
2625555 |
T |
|
| Q |
118 |
cagaagaaatattttctaatgaagaggctgaagagttcaacaatgataatattggtattgtagttgttcatttatgtgcatttagctttgtcacctttgt |
217 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
2625556 |
cagaagaaatattttctcatgaagaggctgaagagttcaacaatgataatattggtattgtagttgttcatttatgtgcagttagctttgtcacctttgt |
2625655 |
T |
|
| Q |
218 |
aacactactaattgttgttttcttattcttctggtattgtttttttcatattgnnnnnnnnnnccaacaattaaattgtggctgaagagttccaccacgt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| || |
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| T |
2625656 |
aacactactaattgttgttttcttattcttctagtattgttttttt----------------tccaacaattaaattgtggctgaagagttccaccatgt |
2625739 |
T |
|
| Q |
318 |
gctttgtcttgtactccaacacatgagctaaatgtcttccactatttattctccatacatatgtcattacgtgaaacaattgcatatgaatgaggatatg |
417 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
2625740 |
gctttgtcttgtactccatcacatgagctaaatgtcttccactatttattctccatacatatgtcattacgtgaaacaattgcgtatgaatgaggatatg |
2625839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 18 - 348
Target Start/End: Original strand, 28840786 - 28841117
Alignment:
| Q |
18 |
taaaactcatcaaatatgacttcaaacattactaaattatcattgtgtgatatagatttaaatattgaatttacacctttgccagatcttaatattgatg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
28840786 |
taaaactcatcaaatatgacttcaaacattactaaattttcattgtgtgatatagatttaaatgttgaatttacacctttgccagatcttaatattgata |
28840885 |
T |
|
| Q |
118 |
cagaagaaatattttctaatgaagaggctgaagagttcaacaatgataatattggtattgtagttgttcatttatgtgcatttagctttgtcacctttgt |
217 |
Q |
| |
|
||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |
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| T |
28840886 |
cagaagaaatattttctcatgaagaggttgaagagttcaacaatgataatattggtattgtagttgttcatttatgtgtatttagttttgtcacctttgt |
28840985 |
T |
|
| Q |
218 |
aacactactaattgttgttttcttattcttctggtattgtttttttcatattg-nnnnnnnnnnccaacaattaaattgtggctgaagagttccaccacg |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |
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|
| T |
28840986 |
aacactactaattgttgttttcttattcttctggtattgtttttttcatattgttttttttcttccaacaattaaattgtggctgaggagttccaccacg |
28841085 |
T |
|
| Q |
317 |
tgctttgtcttgtactccaacacatgagctaa |
348 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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|
| T |
28841086 |
tgctttgtcttgtactccaacacatgagctaa |
28841117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 21 - 228
Target Start/End: Original strand, 28537243 - 28537447
Alignment:
| Q |
21 |
aactcatcaaatatgacttcaaacattactaaattatcattgtgtgatatagatttaaatattgaatttacacctttgccagatcttaatattgatgcag |
120 |
Q |
| |
|
||||||||||||||| | |||||||||| || ||| ||||| |||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||| |
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|
| T |
28537243 |
aactcatcaaatatggcatcaaacattagtatattttcattatgtgatatagatttaaatgttgaatttacacctttgttagatcttaattttgatgcag |
28537342 |
T |
|
| Q |
121 |
aagaaatattttctaatgaagaggctgaagagttcaacaatgataatattggtattgtagttgttcatttatgtgcatttagctttgtcacctttgtaac |
220 |
Q |
| |
|
||| ||| |||||| ||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| || |
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|
| T |
28537343 |
aagtaatcttttctcatgaagaggctgaagagttcagcaatg---atattggtattgtatttgttcatttatgtgcatttagctttgtcacctttgttac |
28537439 |
T |
|
| Q |
221 |
actactaa |
228 |
Q |
| |
|
|||||||| |
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|
| T |
28537440 |
actactaa |
28537447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 139; Significance: 1e-72; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 18 - 188
Target Start/End: Complemental strand, 24011914 - 24011744
Alignment:
| Q |
18 |
taaaactcatcaaatatgacttcaaacattactaaattatcattgtgtgatatagatttaaatattgaatttacacctttgccagatcttaatattgatg |
117 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||||||| |||||||||||||||| |
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|
| T |
24011914 |
taaaactattcaaatatgacttcaaacattactaaattttcattgtgtgatatagatttaattgttgaatttacacctttgctagatcttaatattgata |
24011815 |
T |
|
| Q |
118 |
cagaagaaatattttctaatgaagaggctgaagagttcaacaatgataatattggtattgtagttgttcat |
188 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24011814 |
cagaagaaatattttctcatgaagaggctgaagagttcaacaatgataatattggtattgtagttgttcat |
24011744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 134; Significance: 1e-69; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 21 - 228
Target Start/End: Original strand, 13249505 - 13249709
Alignment:
| Q |
21 |
aactcatcaaatatgacttcaaacattactaaattatcattgtgtgatatagatttaaatattgaatttacacctttgccagatcttaatattgatgcag |
120 |
Q |
| |
|
||||||||||||||| | |||||||||| || ||| ||||| |||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
13249505 |
aactcatcaaatatggcatcaaacattagtagattttcattatgtgatatagatttaattgttgaatttacacctttgccagatcttaattttgatgcag |
13249604 |
T |
|
| Q |
121 |
aagaaatattttctaatgaagaggctgaagagttcaacaatgataatattggtattgtagttgttcatttatgtgcatttagctttgtcacctttgtaac |
220 |
Q |
| |
|
||||||| |||||| ||| ||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||| || |
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|
| T |
13249605 |
aagaaatcttttctcatgtagaggctgaagagttcaacaatg---atattagtattgtatttgttcatttatgtgcatttagctttgtcacctttgttac |
13249701 |
T |
|
| Q |
221 |
actactaa |
228 |
Q |
| |
|
|||||||| |
|
|
| T |
13249702 |
actactaa |
13249709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 21 - 228
Target Start/End: Complemental strand, 33686163 - 33685959
Alignment:
| Q |
21 |
aactcatcaaatatgacttcaaacattactaaattatcattgtgtgatatagatttaaatattgaatttacacctttgccagatcttaatattgatgcag |
120 |
Q |
| |
|
||||||||||||||| | |||||||||| || ||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
33686163 |
aactcatcaaatatggcatcaaacattagtagattttcacaatgtgatatagatttaaatgttgaatttacacctttgccagatcttaattttgatgcag |
33686064 |
T |
|
| Q |
121 |
aagaaatattttctaatgaagaggctgaagagttcaacaatgataatattggtattgtagttgttcatttatgtgcatttagctttgtcacctttgtaac |
220 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||| | || |
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|
| T |
33686063 |
aagaaatcttttctcatgaagaggctgaagagttcaacaatg---atattggtattgtatttgttcatttatgtgcatttagctttgtcccctttcttac |
33685967 |
T |
|
| Q |
221 |
actactaa |
228 |
Q |
| |
|
|||||||| |
|
|
| T |
33685966 |
actactaa |
33685959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 126; Significance: 8e-65; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 21 - 228
Target Start/End: Original strand, 17352190 - 17352394
Alignment:
| Q |
21 |
aactcatcaaatatgacttcaaacattactaaattatcattgtgtgatatagatttaaatattgaatttacacctttgccagatcttaatattgatgcag |
120 |
Q |
| |
|
||||||||||||||| | |||||||||| || ||| ||| |||||||||||||||||| |||||||||||||||||| |||||||||| |||||| || |
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|
| T |
17352190 |
aactcatcaaatatggcatcaaacattagtagattttcaaaatgtgatatagatttaaatgttgaatttacacctttgctagatcttaattttgatgtag |
17352289 |
T |
|
| Q |
121 |
aagaaatattttctaatgaagaggctgaagagttcaacaatgataatattggtattgtagttgttcatttatgtgcatttagctttgtcacctttgtaac |
220 |
Q |
| |
|
||||||| |||||| |||||||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| || |
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|
| T |
17352290 |
aagaaatcttttctcatgaagaggccgaagagttcaacaatg---atattggtattgtatttgttcatttatgtgcatttagctttgtcacctttgttac |
17352386 |
T |
|
| Q |
221 |
actactaa |
228 |
Q |
| |
|
|||||||| |
|
|
| T |
17352387 |
actactaa |
17352394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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