View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11632_low_6 (Length: 312)

Name: NF11632_low_6
Description: NF11632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11632_low_6
NF11632_low_6
[»] chr1 (2 HSPs)
chr1 (123-303)||(2626221-2626401)
chr1 (119-265)||(2626002-2626148)
[»] chr4 (1 HSPs)
chr4 (132-253)||(33661127-33661257)
[»] chr7 (3 HSPs)
chr7 (203-265)||(22367106-22367168)
chr7 (264-303)||(17352490-17352529)
chr7 (137-175)||(22367088-22367126)
[»] chr3 (2 HSPs)
chr3 (256-303)||(51242176-51242223)
chr3 (262-302)||(51242249-51242289)


Alignment Details
Target: chr1 (Bit Score: 153; Significance: 4e-81; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 123 - 303
Target Start/End: Original strand, 2626221 - 2626401
Alignment:
Q  123 caaggagcaattcaagaaaatattgaagtcacataccatgatttggacaatggcatagatatgaatttgagagacaacatagaccatgagttggacaatg 222  Q
    |||||| |||||||||||||||||||||||||  ||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  2626221 caaggatcaattcaagaaaatattgaagtcacggaccatgatttgaacaatagcatagatatgaatttgggagacaacatagaccatgagttggacaatg 2626320  T
Q  223 gtaagttatttttctttaactcattcattaataattttttcttcattgttgttcaaagagtctttcactatttcttcttct 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  2626321 gtaagttatttttctttaactcattcattaataattttttcttcattgttgttcaaagagtctttcattatttcttcttct 2626401  T

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Target: chr1; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 119 - 265
Target Start/End: Original strand, 2626002 - 2626148
Alignment:
Q  119 catgcaaggagcaattcaagaaaatattgaagtcacataccatgatttggacaatggcatagatatgaatttgagagacaacatagaccatgagttggac 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  2626002 catgcaaggagcaattcaagaaaatattgaagtcacataccatgatttggacaatggcatagatatgaatttgggagacaacatagaccatgagttggac 2626101  T
Q  219 aatggtaagttatttttctttaactcattcattaataattttttctt 265  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  2626102 aatggtaagttatttttctttaactcattcattaataattttttctt 2626148  T

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Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 132 - 253
Target Start/End: Complemental strand, 33661257 - 33661127
Alignment:
Q  132 attcaagaaaatattgaagtcacataccatgatttggacaatggcatagatatgaatttgagagacaa---------catagaccatgagttggacaatg 222  Q
    ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||  ||||||         || | || |||| ||||||||||    
T  33661257 attcaagaaaatactgaagtcacataccatgatttggacaatggtatagatatgaatttggaagacaatttagaagtcacaaacaatgatttggacaatg 33661158  T
Q  223 gtaagttatttttctttaactcattcattaa 253  Q
    |||||||||||||||||| ||||||||||||    
T  33661157 gtaagttatttttctttagctcattcattaa 33661127  T

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Target: chr7 (Bit Score: 47; Significance: 8e-18; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 203 - 265
Target Start/End: Original strand, 22367106 - 22367168
Alignment:
Q  203 agaccatgagttggacaatggtaagttatttttctttaactcattcattaataattttttctt 265  Q
    ||||||||| ||||||||||||||||| ||||| ||||||||||||||||| |||||||||||    
T  22367106 agaccatgatttggacaatggtaagttgtttttatttaactcattcattaagaattttttctt 22367168  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 264 - 303
Target Start/End: Original strand, 17352490 - 17352529
Alignment:
Q  264 ttcattgttgttcaaagagtctttcactatttcttcttct 303  Q
    ||||||||||| ||||||||||| ||||||||||||||||    
T  17352490 ttcattgttgtccaaagagtcttccactatttcttcttct 17352529  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 175
Target Start/End: Original strand, 22367088 - 22367126
Alignment:
Q  137 agaaaatattgaagtcacataccatgatttggacaatgg 175  Q
    |||||||||||||||| || |||||||||||||||||||    
T  22367088 agaaaatattgaagtcccagaccatgatttggacaatgg 22367126  T

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Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 256 - 303
Target Start/End: Complemental strand, 51242223 - 51242176
Alignment:
Q  256 attttttcttcattgttgttcaaagagtctttcactatttcttcttct 303  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||    
T  51242223 atttcttcttcattgttgttcaaagagtctttcactatttcttcttct 51242176  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 262 - 302
Target Start/End: Complemental strand, 51242289 - 51242249
Alignment:
Q  262 tcttcattgttgttcaaagagtctttcactatttcttcttc 302  Q
    |||||| |||||||||| ||||||| |||||||||||||||    
T  51242289 tcttcaatgttgttcaaggagtcttccactatttcttcttc 51242249  T

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