View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11632_low_8 (Length: 302)
Name: NF11632_low_8
Description: NF11632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11632_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 149; Significance: 1e-78; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 24 - 176
Target Start/End: Original strand, 39627377 - 39627529
Alignment:
| Q |
24 |
ggaaggacaaatcaagttcttgatgatcaatagaaaaggaaacagctgcaattttgttagtacaaaagggatgattcggaaacttgagctttatgctctc |
123 |
Q |
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| T |
39627377 |
ggaaggacaaatcaagttcttgatgatcaatagaaaaggaaacagctgcaattttgttagtacaaaagggatgattcggaaacttgagctttatgctctc |
39627476 |
T |
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| Q |
124 |
ataacttgagagccctgttacaatgtgactaatagataagaaaaatgacatgc |
176 |
Q |
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| T |
39627477 |
ataacttgagagccctgttacaatgtgactaatagataagaaaaatgaaatgc |
39627529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 24 - 176
Target Start/End: Original strand, 39616649 - 39616819
Alignment:
| Q |
24 |
ggaaggacaaatcaagttcttgatgatcaatagaaaaggaaacagctgcaattttgttagtacaaaagggatgattcggaaacttgagctttatgctctc |
123 |
Q |
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| T |
39616649 |
ggaaggacaaatgaagttcctgatgatcaatagaaaaggaaacagctgcaattttgttagtacaaaagggatgattcggaaacttgagctttatgctctc |
39616748 |
T |
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| Q |
124 |
ataactt------------------gagagccctgttacaatgtgactaatagataagaaaaatgacatgc |
176 |
Q |
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| T |
39616749 |
ataagttaaattgcttgtgaattttgagagccatgttacaatgtgactaatagataagaaaaatgacatgc |
39616819 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 240 - 294
Target Start/End: Original strand, 39627593 - 39627647
Alignment:
| Q |
240 |
gtagttttggatgattgaactaaactgccattagaaacaattttgcctctctgct |
294 |
Q |
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| T |
39627593 |
gtagttttggatgattgaactaaactgccattagaaacaattttgcctctttgct |
39627647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 294
Target Start/End: Original strand, 39616880 - 39616934
Alignment:
| Q |
240 |
gtagttttggatgattgaactaaactgccattagaaacaattttgcctctctgct |
294 |
Q |
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| T |
39616880 |
gtagttttggattattgaactaaagtgccataagaaacaatttttcctctttgct |
39616934 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 39 - 127
Target Start/End: Original strand, 24200314 - 24200402
Alignment:
| Q |
39 |
gttcttgatgatcaatagaaaaggaaacagctgcaattttgttagtacaaaagggatgattcggaaacttgagctttatgctctcataa |
127 |
Q |
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| T |
24200314 |
gttcctgatgatcaatagaaaagaaaacagctgcaactttgttagtagaaaagggaagatttggaaacttgagctttatgctctcataa |
24200402 |
T |
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