View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11633_high_3 (Length: 236)
Name: NF11633_high_3
Description: NF11633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11633_high_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 164; Significance: 9e-88; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 18 - 217
Target Start/End: Complemental strand, 3790823 - 3790624
Alignment:
| Q |
18 |
caaagggtctctactttgtccagcttcttccactactttggcatgtgccgtctgtatacctaaacttattgaagatggtattattgattctgaaggtaat |
117 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3790823 |
caaaggggctctactttgtccagcttcttccactactttagcatgtgctgtctgcatacctaaacttattgaagatggtattattgattctgaaggtaat |
3790724 |
T |
|
| Q |
118 |
actttttactgttttggtatagatttcacaattagaatttttgtaataaaattccataaagctagtttattattcattgcttttgttgttatcataattt |
217 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
3790723 |
actttttattgttttggtatagatttcacaattagaatttttataataaaattccataaatctagtttactattcattgcttttgttgttatcttaattt |
3790624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 26 - 216
Target Start/End: Original strand, 3798542 - 3798729
Alignment:
| Q |
26 |
ctctactttgtccagcttcttccactactttggcatgtgccgtctgtatacctaaacttattgaagatggtattattgattctgaaggtaatacttttta |
125 |
Q |
| |
|
||||||||| |||||||||| ||||||||||||| |||| || || ||| |||||||||||||||||| |||||||||||| ||||||||| ||| | |
|
|
| T |
3798542 |
ctctactttttccagcttctgccactactttggcttgtggtgtttgcgtacataaacttattgaagatgggattattgattctcaaggtaataatttatt |
3798641 |
T |
|
| Q |
126 |
ctgttttggtatagatttcacaattagaatttttgtaataaaattccataaagctagtttattattcattgcttttgttgttatcataatt |
216 |
Q |
| |
|
| ||| |||| |||| |||||| || ||||| |||| |||| |||||||||||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
3798642 |
ttattt---tataaattttacaatttaaaattttggaatataattacataaagctagtttattattcattccttttgttgttatgataatt |
3798729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University