View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11633_low_1 (Length: 419)
Name: NF11633_low_1
Description: NF11633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11633_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 21 - 413
Target Start/End: Original strand, 1266935 - 1267327
Alignment:
| Q |
21 |
acaatccaaataatattgtaatacacaaacacagataccagacacaacactaaagaaagctattaaatgtctcagacacttacacgtgttagacactcaa |
120 |
Q |
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| T |
1266935 |
acaatccaaataatattataatacacaaacacagatactagacacaacactaaagaaagctattaaatgtcccagacacttacaagtgtcagacactcaa |
1267034 |
T |
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| Q |
121 |
acatgctttcaacttgaagtgtcagtgctgcatagaaaaacattgatgaaatgttatttgtagagctatgcagggcatatggtggaatgtactaaagaga |
220 |
Q |
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| T |
1267035 |
acatgctttcaacttgaagtgtcagtgttgcatagaaaaacattgatgaaatgttatttgtagagctatgcagggcatatggtggaatgtactaaagaga |
1267134 |
T |
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| Q |
221 |
tgttagaatcactacaaaaagggttggagtgtggacaaagtgaggtggagattggtgagtacatggctaaacttactgcagatattatctctagaactga |
320 |
Q |
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| T |
1267135 |
tgttagaatcactgcaaaaagggttggagtgtggacaaagtgaggtggagattggtgagtacatggctaaacttactgcagatattatctctagaactga |
1267234 |
T |
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| Q |
321 |
gtttggtgcaagctaccaaaagggaaggaaaatattccatctcctcacagttctccagactctttgtgctcaagcaagtcgccacctttgctt |
413 |
Q |
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| T |
1267235 |
gtttggtgcaagctaccaaaagggaaggaaaatattccatctcctcacagttctccagactctttgtgctcaagcaagtcgccacctttgctt |
1267327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 287 - 404
Target Start/End: Original strand, 6972411 - 6972528
Alignment:
| Q |
287 |
ctaaacttactgcagatattatctctagaactgagtttggtgcaagctaccaaaagggaaggaaaatattccatctcctcacagttctccagactctttg |
386 |
Q |
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| T |
6972411 |
ctaaactcactgcagatattatctctaaaactgagtttagtacaagctacaaaaagggaaagcaaatatttcacctcctcacacaactccaaggtctttg |
6972510 |
T |
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| Q |
387 |
tgctcaagcaagtcgcca |
404 |
Q |
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| T |
6972511 |
tgctcaagcaactcgcca |
6972528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 289 - 374
Target Start/End: Original strand, 5364536 - 5364621
Alignment:
| Q |
289 |
aaacttactgcagatattatctctagaactgagtttggtgcaagctaccaaaagggaaggaaaatattccatctcctcacagttct |
374 |
Q |
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| T |
5364536 |
aaacttagtgcagatgttatctctagaactgagttttgtataagctaccaaaaggtaaagaaaatgttccatctcctcactgttct |
5364621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 303 - 372
Target Start/End: Original strand, 5375991 - 5376059
Alignment:
| Q |
303 |
tattatctctagaactgagtttggtgcaagctaccaaaagggaaggaaaatattccatctcctcacagtt |
372 |
Q |
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| T |
5375991 |
tattatctctagagctgagtttg-tgcaaactaccaaaaaggaaagaaaatgttccatctcctcacagtt |
5376059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 296 - 375
Target Start/End: Original strand, 5370502 - 5370584
Alignment:
| Q |
296 |
ctgcagatattatctctagaactga---gtttggtgcaagctaccaaaagggaaggaaaatattccatctcctcacagttctc |
375 |
Q |
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|||||||||||||| ||||| |||| || |||| ||| ||| |||||||| | |||||| ||||||||||||| ||||||| |
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| T |
5370502 |
ctgcagatattatccctagagctgatcagtctggtacaaactagcaaaaggggaagaaaatgttccatctcctcatagttctc |
5370584 |
T |
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