View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11633_low_3 (Length: 301)
Name: NF11633_low_3
Description: NF11633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11633_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 12145180 - 12144894
Alignment:
| Q |
1 |
attgtatattggaaaaaacaatcctaaagggactcaacatttaaaaggnnnnnnngttggatccaatcaaactcaatttaatactatatatacactgatt |
100 |
Q |
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| T |
12145180 |
attgtatattggaaaaaacaatcctaaagggactcaacatttaaaaggaaaaaaagttggatccaatcaaactcaatttaatactatatatacactgatt |
12145081 |
T |
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| Q |
101 |
caggcannnnnnnnggtacagtgaattcaatcttttagagataatcataatctagaatcaaaagctcttaaccatttagaatttttgaaatcagagaaag |
200 |
Q |
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| T |
12145080 |
caggcattttttt-ggtacagtgaattcaatcttttagagataatcataatctagaatcaaaagctcttaaccatttagaatttttgaaatcagagaaag |
12144982 |
T |
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| Q |
201 |
atgcctcgtggaacgcttgaagttgttttgatcagtgctaaaggccttgaagacaatgattttctctgtaagtaaattaatatgatgt |
288 |
Q |
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| T |
12144981 |
atgcctcgtggaacgcttgaagttgttttgatcagtgctaaaggccttgaagacaatgattttctctgtaagtaaattaatattatgt |
12144894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 188 - 275
Target Start/End: Complemental strand, 12151770 - 12151683
Alignment:
| Q |
188 |
aaatcagagaaagatgcctcgtggaacgcttgaagttgttttgatcagtgctaaaggccttgaagacaatgattttctctgtaagtaa |
275 |
Q |
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|||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||| |||||||||||| | ||||||||| |
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| T |
12151770 |
aaatcaaagaaagatgcctcgtggaactcttgaagttattttgatcagtgctaaaggtcttgatgacaatgattttttatgtaagtaa |
12151683 |
T |
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