View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11633_low_4 (Length: 269)
Name: NF11633_low_4
Description: NF11633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11633_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 4286733 - 4286484
Alignment:
| Q |
1 |
tcaaatttatgattttttgatgtttcgaattgacgtagaattcagtttgtttggatcaactccttctcaagtgctttggggtggactgatgaattaattg |
100 |
Q |
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| T |
4286733 |
tcaaatttatgatttttttatgtttcaaattgacgtagaattcagtttgtttggatcaactccttctcaagtgctttggggtggactgatgaatt----g |
4286638 |
T |
|
| Q |
101 |
tatgtcatgatcaaacaggtggtcataaataaatgttgctgtttattaaaccagttttatgttttgagaccttttatatagcaatgcatgaacattgttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4286637 |
tatgtcatgatcaaacaggtggtcataaataaatgttgctgtttattaaaccagttttatgttttgagaccttttatatagcaatgcatgaacattgttc |
4286538 |
T |
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| Q |
201 |
ttgtgacacaccaagtaggcaagtagatttcttagataatatcagtctgatgtc |
254 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
4286537 |
ttgtgacacaccaagtaggcaagtagatttcttagataatatcagtcttatgtc |
4286484 |
T |
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