View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11634_high_13 (Length: 370)
Name: NF11634_high_13
Description: NF11634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11634_high_13 |
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| [»] scaffold0028 (1 HSPs) |
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Alignment Details
Target: scaffold0028 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 7 - 355
Target Start/End: Complemental strand, 118541 - 118193
Alignment:
| Q |
7 |
ggagcagagatgtggtatctagaaaggaaacataaatctaagtctacagaaacacccttatttcaactgtgttgcggagatggaaaggtccaactacctc |
106 |
Q |
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| T |
118541 |
ggagcagaaatgtggtatctagaaaggaaacataaatctaagtctacagaaacacccttatttcaactgtgttgcggagatggaaaggtccaactacctc |
118442 |
T |
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| Q |
107 |
tcctaagacaacctcctcctgtgcttaaacatctactctttgatcaagaatccgaagatagtaaaaattttcaacaacacacaagaatgtataattcaat |
206 |
Q |
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| T |
118441 |
tcctaagacaacctcctcctgtgcttaaacatctactctttgatcaagaatccgaagatagtaaaaaatttcaacaacacacaagaatgtataattcaat |
118342 |
T |
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| Q |
207 |
gtttgcgtttagttctccaggaatgaaatttgatgataaggttgcgaaaggtagaggtccaccaactatgaggatacaaggacagacatgtcatagaatt |
306 |
Q |
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| T |
118341 |
gtttgcgtttagttctccaggaatgaaatttgatgataaggttgcaaaaggtagaggtccaccaactatgaggatacaaggacagacatgtcatagaatt |
118242 |
T |
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| Q |
307 |
ggtagcatgttaccaattgaaggagaacaaccaaagtatgcccaacttt |
355 |
Q |
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| T |
118241 |
ggtagcatgttaccaattgaaggagaacaaccaaagtatgcccaacttt |
118193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 7 - 311
Target Start/End: Complemental strand, 22072492 - 22072188
Alignment:
| Q |
7 |
ggagcagagatgtggtatctagaaaggaaacataaatctaagtctacagaaacacccttatttcaactgtgttgcggagatggaaaggtccaactacctc |
106 |
Q |
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| T |
22072492 |
ggagcagaaatgtggtatttagaaaggaaacataaatctaagtttacaacaacacctttatttcaactgtgttgcgggaatggaaaagtccaacttcctc |
22072393 |
T |
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| Q |
107 |
tcctaagacaacctcctcctgtgcttaaacatctactctttgatcaagaatccgaagatagtaaaaattttcaacaacacacaagaatgtataattcaat |
206 |
Q |
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| T |
22072392 |
ttctaagacaacctccttctgtacttcaacatctactctttgatcatcaatcagaagattccaaaaatttccagcaaaacacaagaatgtataattcaat |
22072293 |
T |
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| Q |
207 |
gtttgcgtttagttctccaggaatgaaatttgatgataaggttgcgaaaggtagaggtccaccaactatgaggatacaaggacagacatgtcatagaatt |
306 |
Q |
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| T |
22072292 |
gttttcatttagttcaccaggcatgaaatttgatgataaggttactaaaggtagaggtccaccaaccatgaggatacaaggacagacatgtcaccgaatt |
22072193 |
T |
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| Q |
307 |
ggtag |
311 |
Q |
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||||| |
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| T |
22072192 |
ggtag |
22072188 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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