View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11634_high_14 (Length: 358)
Name: NF11634_high_14
Description: NF11634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11634_high_14 |
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Alignment Details
Target: chr5 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 343
Target Start/End: Complemental strand, 41711022 - 41710682
Alignment:
| Q |
1 |
tcaattttcttttagaagtcttctccaaatacttcatttcaactcattccattaatgattggtttgatttttcatctcaaacgtctttaattctatatct |
100 |
Q |
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| T |
41711022 |
tcaattttcttttagaagtcttctccaaatacttcatttcaagtcattccattaatggttggtttgatttttcatctcaaacgtctttaattctatatct |
41710923 |
T |
|
| Q |
101 |
cgtgcttatcttttgaatacgtataataactttcataagtcatcctattaagcacgcgggaaattaatcaatatggaaaaaattccacaagccattgcga |
200 |
Q |
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|||||||||||||||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41710922 |
cgtgcttatcttttgaatacgtgtaa--actttcataagtcatcccattaagcacgcgggaaattaatcaatatggaaaaaattccacaagccattgcga |
41710825 |
T |
|
| Q |
201 |
tcatgacttaaatagaaagacacttgttagaaagacaaaagtgaagtaattttcttgttaattcattcctctaaaatagtgttgctactagtggatgaat |
300 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41710824 |
tcatgacttagatagaaagacacttgttagaaagacaaaagtgaaataattttcttgttaattcattcctctaaaatagtgttgctactagtggatgaat |
41710725 |
T |
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| Q |
301 |
ggacaacacactattagaaggacagtgactgtaaccgtaatca |
343 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41710724 |
ggacaacacactattagaaggacagtgactgtaaccgtaatca |
41710682 |
T |
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