View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11634_high_17 (Length: 277)
Name: NF11634_high_17
Description: NF11634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11634_high_17 |
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Alignment Details
Target: chr6 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 24 - 262
Target Start/End: Complemental strand, 2096096 - 2095860
Alignment:
| Q |
24 |
agtagtagtagtataaatagtaaaactgatcggtttgttataacaaattctgaaaccggatttcaaattttttattaaccagagtaaattctttactctg |
123 |
Q |
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| T |
2096096 |
agtagtagtagtataaatagtaaaactgatcggtttgttataacaaattctgaaaccggatttcaaattttttattaaccagagtaaattctttactctg |
2095997 |
T |
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| Q |
124 |
agtgagagtacaaacgctgtaaatggtaaggtaaaatctaaccagggtaactctggtgtgtactatggtggtnnnnnnntgaaccacggtaactgcaatg |
223 |
Q |
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| T |
2095996 |
agt--gagtacaaacgctgtaaatggtaaggttaaatctaaccagggtaactctggtgtgtactatggtggtaaaaaaatgaaccacggtaactgcaatg |
2095899 |
T |
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| Q |
224 |
agtatggctagtaataatggttacactgtcaatcctatg |
262 |
Q |
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| T |
2095898 |
agtatggctagtaataatggttacactgtcaatcctatg |
2095860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 40 - 120
Target Start/End: Complemental strand, 2104901 - 2104821
Alignment:
| Q |
40 |
atagtaaaactgatcggtttgttataacaaattctgaaaccggatttcaaattttttattaaccagagtaaattctttact |
120 |
Q |
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| T |
2104901 |
atagtaaaattgatcggtttgttataacaaattctgaaaccggatttcaaattttttattaaccagaataaattctttact |
2104821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 45 - 109
Target Start/End: Complemental strand, 2052826 - 2052762
Alignment:
| Q |
45 |
aaaactgatcggtttgttataacaaattctgaaaccggatttcaaattttttattaaccagagta |
109 |
Q |
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| T |
2052826 |
aaaactgatcggtttgttataacaaattctgaaaccggatttcaaataatttatgaaccagagta |
2052762 |
T |
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