View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11634_high_19 (Length: 249)
Name: NF11634_high_19
Description: NF11634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11634_high_19 |
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Alignment Details
Target: chr1 (Bit Score: 183; Significance: 4e-99; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 51300469 - 51300263
Alignment:
| Q |
1 |
aacaaggtatcaacagatgataacttcttttggtggttcgaaatatcaaaggatactattaaagatttagaagctggtattgatatttgcagcctcactt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||| |
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| T |
51300469 |
aacaaggtatcaacagatgataacttcttttggtggttcgaaatatcaaatgatactttaaaagatttagaagctggtattgatatttgcagcctcactt |
51300370 |
T |
|
| Q |
101 |
atctcaggaaaagatatacattgaaaggcttaattgatcaaccggtcccttaacttaattgatcaagtggttccataactaaaaaacgtctcaaagtggt |
200 |
Q |
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||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
51300369 |
atctcaggaaaagatatacgttgaaaggcttaattggtcaaccggtcccttaacttaattgatcaagtggtcccataactaaaaaacgtctcaaagtggt |
51300270 |
T |
|
| Q |
201 |
cccattt |
207 |
Q |
| |
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||||||| |
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| T |
51300269 |
cccattt |
51300263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 233
Target Start/End: Original strand, 51299325 - 51299390
Alignment:
| Q |
168 |
tggttccataactaaaaaacgtctcaaagtggtcccatttgtttcttgccgttataggctttggtc |
233 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||| | ||||| |||||||||||| ||||||| |
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| T |
51299325 |
tggtcccataactaaaaaacgtctcaaagtgatccattaagtttcatgccgttataggttttggtc |
51299390 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 157
Target Start/End: Complemental strand, 18820878 - 18820844
Alignment:
| Q |
123 |
gaaaggcttaattgatcaaccggtcccttaactta |
157 |
Q |
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||||||||||||||||| ||||||||||||||||| |
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| T |
18820878 |
gaaaggcttaattgatctaccggtcccttaactta |
18820844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 44111492 - 44111375
Alignment:
| Q |
1 |
aacaaggtatcaacagatgataacttcttttggtggttcgaaatatcaaaggatactattaaagatttagaagctggtattgatatttgcagcctcactt |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||| || ||||| ||||| ||||||||||||||||||||||| ||| ||||||||||||| ||||||| |
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| T |
44111492 |
aacaaggtatcaacagatgataacttcttttggtgatttgaaatgtcaaatgatactattaaagatttagaagcaggtgttgatatttgcagtctcactt |
44111393 |
T |
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| Q |
101 |
atctcaggaaaagatata |
118 |
Q |
| |
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|| ||| ||||||||||| |
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| T |
44111392 |
atttcaagaaaagatata |
44111375 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 50014420 - 50014303
Alignment:
| Q |
1 |
aacaaggtatcaacagatgataacttcttttggtggttcgaaatatcaaaggatactattaaagatttagaagctggtattgatatttgcagcctcactt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || ||||| |||| ||||||||| ||||||||||||| ||| ||||||||||||| ||||||| |
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| T |
50014420 |
aacaaggtatcaacagatgataacttcttttggtgatttgaaatgtcaattgatactatttaagatttagaagcaggtgttgatatttgcagtctcactt |
50014321 |
T |
|
| Q |
101 |
atctcaggaaaagatata |
118 |
Q |
| |
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|| ||| ||||||||||| |
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|
| T |
50014320 |
atttcaagaaaagatata |
50014303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 22 - 118
Target Start/End: Complemental strand, 18842158 - 18842062
Alignment:
| Q |
22 |
aacttcttttggtggttcgaaatatcaaaggatactattaaagatttagaagctggtattgatatttgcagcctcacttatctcaggaaaagatata |
118 |
Q |
| |
|
|||||||||||||| || ||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||||| |
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| T |
18842158 |
aacttcttttggtgatttgaaatatcaaatgatactattaaagatttagaagcaggtattgatatttgcagtctcacttatttcaggaaaagatata |
18842062 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 126 - 203
Target Start/End: Original strand, 8661677 - 8661760
Alignment:
| Q |
126 |
aggcttaattgatcaaccggtcccttaacttaatt----gatcaag--tggttccataactaaaaaacgtctcaaagtggtccc |
203 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| | || || |||| ||||||||||||||||||||||||||||||| |
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| T |
8661677 |
aggcttaattgatcagccggtcccttaacttaattctttgttccagaatggtcccataactaaaaaacgtctcaaagtggtccc |
8661760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 160
Target Start/End: Complemental strand, 27234819 - 27234785
Alignment:
| Q |
126 |
aggcttaattgatcaaccggtcccttaacttaatt |
160 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| |
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| T |
27234819 |
aggcttaattgatcatccggtcccttaacttaatt |
27234785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 160
Target Start/End: Complemental strand, 36422844 - 36422810
Alignment:
| Q |
126 |
aggcttaattgatcaaccggtcccttaacttaatt |
160 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| |
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| T |
36422844 |
aggcttaattgatcatccggtcccttaacttaatt |
36422810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 157
Target Start/End: Complemental strand, 16604309 - 16604277
Alignment:
| Q |
125 |
aaggcttaattgatcaaccggtcccttaactta |
157 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |
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| T |
16604309 |
aaggcttaattgatctaccggtcccttaactta |
16604277 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 160
Target Start/End: Original strand, 18230317 - 18230350
Alignment:
| Q |
127 |
ggcttaattgatcaaccggtcccttaacttaatt |
160 |
Q |
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|||||||||||||| ||||||||||||||||||| |
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| T |
18230317 |
ggcttaattgatcatccggtcccttaacttaatt |
18230350 |
T |
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