View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11634_high_2 (Length: 826)
Name: NF11634_high_2
Description: NF11634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11634_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 649; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 649; E-Value: 0
Query Start/End: Original strand, 115 - 811
Target Start/End: Original strand, 30318416 - 30319112
Alignment:
| Q |
115 |
cctctcaaatcaccacccttataagaaatataatctttctaccatannnnnnnngtcaaagacaatgtaaatattcaaaattccctcgaaatagaaaata |
214 |
Q |
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| T |
30318416 |
cctctcaaatcaccacccttataagaaatataatctttctaccatattatttttgtcaaagacaatgtaaatattcaaaattccctcgaaatagaaaata |
30318515 |
T |
|
| Q |
215 |
tgtgttttttccttcttaagcgaatgaaagcattcaatagctacaaaagcattattagtaataagccttccatccagaaaaacactatgttcaacatcaa |
314 |
Q |
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| T |
30318516 |
tgtgttttttccttcttaagcgaatgaaagcattcaatagctaaaaaagcattattagtgataagccttccatccagaaaaacactatgttcaacatcaa |
30318615 |
T |
|
| Q |
315 |
tagcttcgggtagtgtgtttgattctatttgcaactacctttgttatgatcttcataatcatgttgtagatattgattggttagttagtagcttcattgc |
414 |
Q |
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| T |
30318616 |
tagcttcgggtagtgtgtttgattctatttgcaactacctttgttatgatcttcataatcatgttgtagatattgattggttagttagtatcttcattgc |
30318715 |
T |
|
| Q |
415 |
tattcatgactctaagggcgatgctatggacatcttttcttactatgggcgaatatttttggtagaaaagggttggtagaccatcatggcctagtgcttt |
514 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30318716 |
tattcatgactctaagggcgatgctatggacatcttttcttactatgggcgaatatttttggtagaaaagggttggtagaccatcatggcctagtgcttt |
30318815 |
T |
|
| Q |
515 |
taaagggtgcatttgttaaatgacagtgctaacctcctcctcagtgtaagcttgtttacaccaaatattgttatcatcaaactcctttcctctcaccacc |
614 |
Q |
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| T |
30318816 |
taaagggtgcatttgttaaatgacaatgctaacctcatcctcagtgtaagcttgtttacaccaaatattgttatcatcaaactcctttcctctcaccacc |
30318915 |
T |
|
| Q |
615 |
tcacaagtgttttcaacgttctctttcctcttccaccaaacacctgctttgtcttttaactttttaatctcatccactttcctccttttcatgcaagaat |
714 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30318916 |
tcacaagtgttttcaacgttctctttcctcttccaccaaacacctgctttgtcttttaactttttaatctcatccactttcctccttttcatgcaagaat |
30319015 |
T |
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| Q |
715 |
tttatgtttagatctccgtccttcaaccgcatggatctgctcccttgtctccatacagtttcctcaattttaattaacttaacatgagttagtgtat |
811 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
30319016 |
tttatgtttagatctccgtccttcaaccgcatggatctgctcccttgtctccatacagtttcctcaattttaagtaacttaacatgagttagtgtat |
30319112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 30318321 - 30318371
Alignment:
| Q |
1 |
gtcaacttctaataaattttatatttatgtcagaagttggtttttgtattt |
51 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30318321 |
gtcaactcctaataaattttatatttatgtcagaagttggtttttgtattt |
30318371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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