View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11634_high_23 (Length: 213)
Name: NF11634_high_23
Description: NF11634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11634_high_23 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 147; Significance: 1e-77; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 17 - 198
Target Start/End: Complemental strand, 41762573 - 41762383
Alignment:
| Q |
17 |
atgatgaaaattcatttaatagtatgaaagtgaaaggtccatagttttctaccatatctatgtcaaagtatttatggattttgaccatttgtatcaatta |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
41762573 |
atgatgaaaattcatttaatagtatgaaagtgaaaggtccatagttttctaccatatctatgtcaaagtacttagggattttgaccatttgtatcaatta |
41762474 |
T |
|
| Q |
117 |
attgacaaactcttgggtctctttcagaaataaaagtaaaagtctttattcgtt---------attagtaacttacaattgtttcttcctt |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |
|
|
| T |
41762473 |
attgacaaactcttgggtctctttcagaaataaaagtaaaagtctttattctttatgttattaattagtaacttacaattgtttcttcctt |
41762383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 91
Target Start/End: Complemental strand, 41792838 - 41792764
Alignment:
| Q |
17 |
atgatgaaaattcatttaatagtatgaaagtgaaaggtccatagttttctaccatatctatgtcaaagtatttat |
91 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||||| || | ||||||||||||||||||||||| | |||||| |
|
|
| T |
41792838 |
atgatgaaaattcatttaagagtatgaaaatgaaatgttttttgttttctaccatatctatgtcaaggcatttat |
41792764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 159
Target Start/End: Complemental strand, 41779247 - 41779203
Alignment:
| Q |
115 |
taattgacaaactcttgggtctctttcagaaataaaagtaaaagt |
159 |
Q |
| |
|
||||||| |||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
41779247 |
taattgagaaactcttgggtctttttcaagaataaaagtaaaagt |
41779203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 161
Target Start/End: Complemental strand, 41792761 - 41792705
Alignment:
| Q |
105 |
ttgtatcaattaattgacaaactcttgggtctctttcagaaataaaagtaaaagtct |
161 |
Q |
| |
|
||||||||| ||||||| ||| |||||| ||| |||||||||||||| ||| ||||| |
|
|
| T |
41792761 |
ttgtatcaagtaattgagaaattcttggatctttttcagaaataaaactaatagtct |
41792705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University