View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11634_high_6 (Length: 594)
Name: NF11634_high_6
Description: NF11634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11634_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 526; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 17 - 583
Target Start/End: Complemental strand, 1630514 - 1629944
Alignment:
| Q |
17 |
atatatatagtcatattaatcaaaatatctggattcgtcacttgcagaaacagaagaagggtcatttccaaattggttttctgtgcatgaaaggaagctt |
116 |
Q |
| |
|
||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
1630514 |
atatatatagtcatactaatcaaaaattttggattcgtcacttgcagaaacagaagaagggtcattttcaaattggttttctgtgcatgaaaggaagctt |
1630415 |
T |
|
| Q |
117 |
ttgcagtctaagtctccagtaaagtacaatcttgtggtggcaaaagatggttctggtcagtacaagactgtgcaagctgctttaaatgctgctgctaaga |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1630414 |
ttgcagtctaagtctccagtaaagtacaatcttgtggtggcaaaagatggttctggacagtacaagactgtgcaagctgctttaaatgctgctgctaaga |
1630315 |
T |
|
| Q |
217 |
gaaaatataagacaaggtttgtgatacatgttaagaaaggtgtttatagagagaacattgaggttgctgttcataatgacaatattatgctggttggtga |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1630314 |
gaaaatataagacaaggtttgtgatacatgttaagaaaggtgtttatagagagaacattgaggttgctgttcataatgacaatattatgctggttggtga |
1630215 |
T |
|
| Q |
317 |
tgggatgcaaaataccataataacaagttctagaagtgttcaaggtggttataccacttatagctctgcaacagcaggtgagttatattccatctccttt |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1630214 |
tgggatgcaaaataccataataacaagttctagaagtgttcaaggtggttataccacttatagctctgcaacagcaggtgagttatattccatctccttt |
1630115 |
T |
|
| Q |
417 |
aatctctttttattttatcatttgaagttctaaatttttataataagataggtttataatatttaaattatacttgaggctttctta----catacaatt |
512 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
1630114 |
aatctctttttattttatcatttgaagttctaaatttttataataagataggtttataatatttaaattatacttgaggctttcttacatgcatacaatt |
1630015 |
T |
|
| Q |
513 |
actttaattttttattttaaataattactcttggatcatttaaatttaggtattgatggacttcacttcat |
583 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1630014 |
actttcattttttattttaaataattactcttggatcatttaaatttaggtattgatggacttcacttcat |
1629944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 18 - 414
Target Start/End: Complemental strand, 1624538 - 1624142
Alignment:
| Q |
18 |
tatatatagtcatattaatcaaaatatctggattcgtcacttgcagaaacagaagaagggtcatttccaaattggttttctgtgcatgaaaggaagcttt |
117 |
Q |
| |
|
|||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1624538 |
tatatatagtcatactaatcaaaatttctggatccgtcacttgcagaaacagaagaagggtcatttccaaattggttttctgtgcatgaaaggaagcttt |
1624439 |
T |
|
| Q |
118 |
tgcagtctaagtctccagtaaagtacaatcttgtggtggcaaaagatggttctggtcagtacaagactgtgcaagctgctttaaatgctgctgctaagag |
217 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1624438 |
tgcagtcaaagggtccagtaaagtacaatcttgtggtggcaaaagatggttctggtcagtacaagactgtgcaagctgctttaaatgctgctgctaagag |
1624339 |
T |
|
| Q |
218 |
aaaatataagacaaggtttgtgatacatgttaagaaaggtgtttatagagagaacattgaggttgctgttcataatgacaatattatgctggttggtgat |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1624338 |
aaaatataagacaaggtttgtgatacatgttaagaaaggtgtttatagagagaacattgaggttgctgttcataatgacaatattatgctggttggtgat |
1624239 |
T |
|
| Q |
318 |
gggatgcaaaataccataataacaagttctagaagtgttcaaggtggttataccacttatagctctgcaacagcaggtgagttatattccatctcct |
414 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||| |||| |
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|
| T |
1624238 |
gggatgcaaaataccataataacaagttctagaagtgttcaaggtggttttaccacttatagctctgcaacagcaggtgaattatatttcatttcct |
1624142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 17 - 414
Target Start/End: Complemental strand, 1607518 - 1607121
Alignment:
| Q |
17 |
atatatatagtcatattaatcaaaatatctggattcgtcacttgcagaaacagaagaagggtcatttccaaattggttttctgtgcatgaaaggaagctt |
116 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1607518 |
atatatatagtcatactaatcaaaatttctggattcgtcacttgcagaaacagaagaagggtcatttccaaattggttttctgtgcatgaaaggaagctt |
1607419 |
T |
|
| Q |
117 |
ttgcagtctaagtctccagtaaagtacaatcttgtggtggcaaaagatggttctggtcagtacaagactgtgcaagctgctttaaatgctgctgctaaga |
216 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
1607418 |
ttgcagtcaaagggtccagtaaagtacaatcttgtggtggcaaaagatggttctggacagtacaagactgtgcaggctgctttaaatgctgctgctaaga |
1607319 |
T |
|
| Q |
217 |
gaaaatataagacaaggtttgtgatacatgttaagaaaggtgtttatagagagaacattgaggttgctgttcataatgacaatattatgctggttggtga |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1607318 |
gaaaatataagacaaggtttgtgatacatgttaagaaaggtgtttatagagagaacattgaggttgctgttcataatgacaatattatgctggttggtga |
1607219 |
T |
|
| Q |
317 |
tgggatgcaaaataccataataacaagttctagaagtgttcaaggtggttataccacttatagctctgcaacagcaggtgagttatattccatctcct |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||| |||| |
|
|
| T |
1607218 |
tgggatgcaaaataccataataacaagttctagaagtgttcaaggtggttttaccacttatagctctgcaacagcaggtgaattatatttcatttcct |
1607121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 17 - 412
Target Start/End: Original strand, 10819760 - 10820160
Alignment:
| Q |
17 |
atatatatagtcatattaatcaaaatatctggattcgtcacttgcagaaacagaa------gaagggtcatttccaaattggttttctgtgcatgaaagg |
110 |
Q |
| |
|
||||||||||||||| ||||| |||| ||||||| ||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
10819760 |
atatatatagtcatactaatctaaatttctggatccgtca-ttgcagaaacagaaatagaagaagggtcacttccaaattggttttctgtgcatgaaagg |
10819858 |
T |
|
| Q |
111 |
aagcttttgcagtctaagtctccagtaaagtacaatcttgtggtggcaaaagatggttctggtcagtacaagactgtgcaagctgctttaaatgctgctg |
210 |
Q |
| |
|
|||||||||||||||||||||||| | |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10819859 |
aagcttttgcagtctaagtctccaatgaagttcaatcttgtggtggcaaaagatggttctggacagtacaagactgtgcaagctgctttaaatgctgctg |
10819958 |
T |
|
| Q |
211 |
ctaagagaaaatataagacaaggtttgtgatacatgttaagaaaggtgtttatagagagaacattgaggttgctgttcataatgacaatattatgctggt |
310 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| || |||||| |||| |
|
|
| T |
10819959 |
ctaagagaaaatacaagacaaggtatgtgatacatgtgaagaaaggtgtttataaagagaacattgaggttgctgttcataatgataacattatgttggt |
10820058 |
T |
|
| Q |
311 |
tggtgatgggatgcaaaataccataataacaagttctagaagtgttcaaggtggttataccacttatagctctgcaacagcaggtgagttatattccatc |
410 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
10820059 |
cggtgatggaatgcaaaataccatcataacaagttctagaagtgttcaaggtggttttaccacttatagctctgcaacagccggtgagttatattccatc |
10820158 |
T |
|
| Q |
411 |
tc |
412 |
Q |
| |
|
|| |
|
|
| T |
10820159 |
tc |
10820160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 423 - 583
Target Start/End: Original strand, 10820598 - 10820754
Alignment:
| Q |
423 |
tttttattttatcatttgaagttctaaatttttataataagataggtttataatatttaaattatacttgaggctttcttacatacaattactttaattt |
522 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||| || | |
|
|
| T |
10820598 |
tttttattttatattttgaagttctaaaattttatactaagataggtttataatatttaaattataattgtggctttcttacctacaattactttcatat |
10820697 |
T |
|
| Q |
523 |
tttattttaaataattactcttggatcatttaaatttaggtattgatggacttcacttcat |
583 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10820698 |
----ttttaaataattactcttggatcatttaaatttaggtattgatggacttcacttcat |
10820754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 540 - 583
Target Start/End: Complemental strand, 1606689 - 1606646
Alignment:
| Q |
540 |
ctcttggatcatttaaatttaggtattgatggacttcacttcat |
583 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1606689 |
ctcttggatcatttaaatttaggtattgatggacttcacttcat |
1606646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 54 - 403
Target Start/End: Complemental strand, 18785528 - 18785179
Alignment:
| Q |
54 |
tcacttgcagaaacagaagaagggtcatttccaaattggttttctgtgcatgaaaggaagcttttgcagtctaagtctccagtaaagtacaatcttgtgg |
153 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
18785528 |
tcacttgcagaaacagaagaagggtcatttccaaattggttttctatgcatgaaaggaagcttttgcagtctaagtctccagtaaagtacaatattgtgg |
18785429 |
T |
|
| Q |
154 |
tggcaaaagatggttctggtcagtacaagactgtgcaagctgctttaaatgctgctgctaagagaaaatataagacaaggtttgtgatacatgttaagaa |
253 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
18785428 |
tggcaaaagatggttctggacagtacaagactgtgcaagctgctctaaatgctgctgctaagagaaaatataagacaaggtttgtgatacatgtgaagaa |
18785329 |
T |
|
| Q |
254 |
aggtgtttatagagagaacattgaggttgctgttcataatgacaatattatgctggttggtgatgggatgcaaaataccataataacaagttctagaagt |
353 |
Q |
| |
|
||||||||||| |||||||||||||||||| ||||| ||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18785328 |
aggtgtttataaagagaacattgaggttgcggttcacaatgataacattatgttggttggtgatgggatgcaaaataccataataacaagttctagaagt |
18785229 |
T |
|
| Q |
354 |
gttcaaggtggttataccacttatagctctgcaacagcaggtgagttata |
403 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||| ||||| |
|
|
| T |
18785228 |
gttcaaggtggttttaccacttatagctctgcaacagcaggtgaattata |
18785179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 189 - 395
Target Start/End: Complemental strand, 12803590 - 12803384
Alignment:
| Q |
189 |
caagctgctttaaatgctgctgctaagagaaaatataagacaaggtttgtgatacatgttaagaaaggtgtttatagagagaacattgaggttgctgttc |
288 |
Q |
| |
|
|||| |||| |||||||||||| | ||||| | ||| ||||| ||||| |||| ||| ||||||||||||||||||||||| |||| ||||| | |
|
|
| T |
12803590 |
caagatgctataaatgctgctgggaggagaaggtttaaaacaagatttgttatacgtgtgaagaaaggtgtttatagagagaatattgtggttg-ggaag |
12803492 |
T |
|
| Q |
289 |
at-aatgacaatattatgctggttggtgatgggatgcaaaataccataataacaagttctagaagtgttcaaggtggttataccacttatagctctgcaa |
387 |
Q |
| |
|
|| ||||| ||||||||| |||| |||||||| | |||||| | ||||||||| ||||| |||||||| ||||| ||| || ||||||||||| | |
|
|
| T |
12803491 |
atgaatgataatattatgttggtaggtgatggaagtagaaatacagtgataacaagtaatagaaatgttcaagctggttttactacctatagctctgcca |
12803392 |
T |
|
| Q |
388 |
cagcaggt |
395 |
Q |
| |
|
| |||||| |
|
|
| T |
12803391 |
ctgcaggt |
12803384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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