View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11634_low_11 (Length: 391)
Name: NF11634_low_11
Description: NF11634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11634_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 367
Target Start/End: Original strand, 51300453 - 51300818
Alignment:
| Q |
1 |
tctgttgataccttgttcctccattctaaattttttatttaatatatgcttccattacttcaaaagtgtggataaaatgaatataattatagatggcata |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51300453 |
tctgttgataccttgttcctccattctaaatttt-tatttaatatatgcttccattacttcaaaagtgtggataaaatgaatataattatagatggcata |
51300551 |
T |
|
| Q |
101 |
aactaacctttctgatcaactcttcattaagagaaaacatatcttctaaaggagtaaaagccatttccatatctagttgtgtgaactcaggttgtctatc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
51300552 |
aactaacctttctgatcaactcttcattaagagaaaacatatcttctaaaggagtaaaagccatttccatatctagttgtgtgaactcaggtagtctatc |
51300651 |
T |
|
| Q |
201 |
agctcttaaatcttcatcccgaaaacatctgcgaaaagtaaattgcatttaatccaaaaacaaaaatggtcagttgcatcacaatctttataatgtaatt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
51300652 |
agctcttaaatcttcatcccgaaaacatctgcgaaaagtaaattgcatttaatccaaaaacgaaaatggtcagttgcatcacaatctttataatgtaatt |
51300751 |
T |
|
| Q |
301 |
ttttggtttagattagaaaagctagcattctgtattcttggtttatgtaaatcacgcaaccaaatgc |
367 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
51300752 |
ttttggtttagattagaaaagctagcattctgtattcttggttgatgtaaatcacgcaaccaaatgc |
51300818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 367
Target Start/End: Original strand, 44111476 - 44111839
Alignment:
| Q |
1 |
tctgttgataccttgttcctccattctaaattttttatttaatatatgcttccattacttcaaaagtgtggataaaatgaatataattatagatggcata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||||||||| ||||||||||||||| |
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| T |
44111476 |
tctgttgataccttgttcctccattctaaatttt-tatttaatatatgtttccattacttcaaaattgtggataaaatgaatatgattatagatggcata |
44111574 |
T |
|
| Q |
101 |
aactaacctttctgatcaactcttcattaagagaaaacatatcttctaaaggagtaaaagccatttccatatctagttgtgtgaactcaggttgtctatc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
44111575 |
aactaacctttctgatcaactcttcattaagagacaacatatcctctaaaggagtaaaagccatctccatatctagttgtgtgaactcaggttgtctatc |
44111674 |
T |
|
| Q |
201 |
agctcttaaatcttcatcccgaaaacatctgcgaaaagtaaattgcatttaatccaaaaacaaaaatggtcagttgcatcacaatctttataatgtaatt |
300 |
Q |
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|||||||| |||||||||||||||||||||| ||| ||||||||||||| ||||| ||| ||||||||||| |||||||||||||||| || ||||| |
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| T |
44111675 |
agctcttagatcttcatcccgaaaacatctgtaaaaggtaaattgcatttgatccagaaagaaaaatggtcacttgcatcacaatctttttattgtaa-- |
44111772 |
T |
|
| Q |
301 |
ttttggtttagattagaaaagctagcattctgtattcttggtttatgtaaatcacgcaaccaaatgc |
367 |
Q |
| |
|
||||||||||| ||| |||||| |||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
44111773 |
ttttggtttagcttataaaagcaagcattctgtattcttggtttatgtaaatcacacaaccaaatgc |
44111839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 367
Target Start/End: Original strand, 50014404 - 50014767
Alignment:
| Q |
1 |
tctgttgataccttgttcctccattctaaattttttatttaatatatgcttccattacttcaaaagtgtggataaaatgaatataattatagatggcata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||||||||| ||||||||||||||| |
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| T |
50014404 |
tctgttgataccttgttcctccattctaaatttt-tatttaatatatgtttccattacttcaaaattgtggataaaatgaatatgattatagatggcata |
50014502 |
T |
|
| Q |
101 |
aactaacctttctgatcaactcttcattaagagaaaacatatcttctaaaggagtaaaagccatttccatatctagttgtgtgaactcaggttgtctatc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
50014503 |
aactaacctttctgatcaactcttcattaagagacaacatatcctctaaaggagtaaaagccatctccatatctagttgtgtgaactcaggttgtctatc |
50014602 |
T |
|
| Q |
201 |
agctcttaaatcttcatcccgaaaacatctgcgaaaagtaaattgcatttaatccaaaaacaaaaatggtcagttgcatcacaatctttataatgtaatt |
300 |
Q |
| |
|
|||||||| |||||||||||||||||||||| ||| ||||||||||||| ||||| ||| ||||||||||| |||||||||||||||| || ||||| |
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| T |
50014603 |
agctcttagatcttcatcccgaaaacatctgtaaaaggtaaattgcatttgatccagaaagaaaaatggtcacttgcatcacaatctttttattgtaa-- |
50014700 |
T |
|
| Q |
301 |
ttttggtttagattagaaaagctagcattctgtattcttggtttatgtaaatcacgcaaccaaatgc |
367 |
Q |
| |
|
||||||||||| ||| |||||| ||||||| |||||||||||||||||||||||| ||||||||||| |
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|
| T |
50014701 |
ttttggtttagcttataaaagcaagcattcagtattcttggtttatgtaaatcacacaaccaaatgc |
50014767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 18853184 - 18853417
Alignment:
| Q |
1 |
tctgttgataccttgttcctccattctaaattttttatttaatatatgcttccattacttcaaaagtgtggataaaatgaatataattatagatggcata |
100 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||| |||||||||||| ||||| || |||||| ||||||||||| |||||| ||||||||||||||| |
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| T |
18853184 |
tctgctgataccttattcctccattctaaatttt--atttaatatatgtttccaataattcaaatttgtggataaaacgaatatgattatagatggcata |
18853281 |
T |
|
| Q |
101 |
aactaacctttctgatcaactcttcattaagagaaaacatatcttctaaaggagtaaaagccatttccatatctagttgtgtgaactcaggttgtctat- |
199 |
Q |
| |
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|||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18853282 |
aactaacctttctgatcaactcttcattaagagacaaaatatcctctaaaggagtaaaagccatttccatatctagttgtgtgaactcaggttgtctatc |
18853381 |
T |
|
| Q |
200 |
-----cagctcttaaatcttcatcccgaaaacatct |
230 |
Q |
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||||||||||||||||||| ||||||||||| |
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| T |
18853382 |
atgaacagctcttaaatcttcatctcgaaaacatct |
18853417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 37 - 230
Target Start/End: Original strand, 18842173 - 18842372
Alignment:
| Q |
37 |
atttaatatatgcttccattacttcaaaagtgtggataaaatgaatataattatagatggcataaactaacctttctgatcaactcttcattaagagaaa |
136 |
Q |
| |
|
|||||||||||| ||||| || |||||| ||||||||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
18842173 |
atttaatatatgtttccaataattcaaatttgtggataaaactaatattattacagatggcataaactaacctttctgatcaactcttcattaagagaca |
18842272 |
T |
|
| Q |
137 |
acatatcttctaaaggagtaaaagccatttccatatctagttgtgtgaactcaggttgtctat------cagctcttaaatcttcatcccgaaaacatct |
230 |
Q |
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| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |
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| T |
18842273 |
aaatatcctctaaaggagtaaaagccatttccatatctagttgtgtgaactcaggttgtctatcatgaacagctcttaaatcttcatctcgaaaacatct |
18842372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 276 - 335
Target Start/End: Original strand, 18842380 - 18842437
Alignment:
| Q |
276 |
gcatcacaatctttataatgtaattttttggtttagattagaaaagctagcattctgtat |
335 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||| ||| |||||| |||||||||||| |
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|
| T |
18842380 |
gcatcacaatctttttaatgtaa--ttttggtttagcttataaaagcaagcattctgtat |
18842437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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